Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00090
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    28   1.7  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   2.3  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.2  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   6.9  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    25   9.1  

>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 92  RLGVQIERSGAL-ISSWGCVRRV 157
           RLG+QIE       SSW CVRR+
Sbjct: 8   RLGLQIENKFVFRSSSWNCVRRI 30


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 350 IPHPTSSVYNEIESIFSIFPNPI 282
           IPH TSSV N+I S+     +PI
Sbjct: 134 IPHTTSSVSNDIPSVLGSSDHPI 156


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 455 IKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIPHP--TSSVYNEIESIFSIFPNPI 282
           I+ N+ F     PN SSD S  +    NI Y  L +P       +   + +I S+   P+
Sbjct: 645 IELNLEFGVILYPNISSDVSACSHGFMNI-YKDLNLPRSYFADCITKSVSNIDSLLNTPV 703

Query: 281 LIM 273
            I+
Sbjct: 704 KIL 706


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 446 NISFSQFTIPNHSSDFSIIAITINNICYVSLYIPHP 339
           N++F Q  IP+ ++DF+ +A    N+ + S  IP+P
Sbjct: 220 NVTFGQPNIPSTTTDFAGLAAP--NMVHPSQAIPNP 253


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 270 RFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKA 157
           RFQ S ++W S I N+  +  L M+     C+L+ GK+
Sbjct: 58  RFQGSQLSWDSFILNNGKAYWLAMLVGLLECLLSGGKS 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,952
Number of Sequences: 5004
Number of extensions: 54497
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)