Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00090
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0101 - 1222487-1222842,1222935-1223281,1223330-1223490,122...    29   4.1  
12_02_0269 - 16617292-16618852,16622763-16623562                       29   5.4  
11_06_0285 - 21914563-21914707,21914954-21915078,21915215-219153...    28   9.5  

>10_01_0101 -
           1222487-1222842,1222935-1223281,1223330-1223490,
           1223605-1223669,1223712-1224669
          Length = 628

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/88 (23%), Positives = 42/88 (47%)
 Frame = -3

Query: 473 GGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIPHPTSSVYNEIESIFSIF 294
           G + +L   N+S +QF     SS  S++++T+ ++ Y +L  P P   +     SI    
Sbjct: 258 GTLQMLEILNLSHNQFRGSLPSSIASMLSLTVLDVSYNNLEGPLPAGHLLQN-ASISWFI 316

Query: 293 PNPILIMGDFNAQM*HGAAPLVIIMALD 210
            N ++  G    ++     P+V+++  D
Sbjct: 317 HNKVIASGHHKPKLLSLLLPIVLVVNFD 344


>12_02_0269 - 16617292-16618852,16622763-16623562
          Length = 786

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -2

Query: 276 HGRFQCSNVAWGSSISNHYGSRLL-DMVDKNKWCILNTGKATRRTQPHEEISAPDLSICT 100
           H RF+C+   + S   N   S +L D++ + ++     G  +      E++S     +  
Sbjct: 215 HSRFECAVFVFASR--NRSTSMILNDILSQLRYDGSADGIKSLINATREKLSCKRFLVVI 272

Query: 99  PNLASIVSWNTLSSSY 52
            ++ASI +WN++S ++
Sbjct: 273 DDIASIETWNSISGAF 288


>11_06_0285 -
           21914563-21914707,21914954-21915078,21915215-21915382,
           21917184-21917475,21917927-21918096
          Length = 299

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 255 NVAWGSSISNHYGSRLLDMVDKNKWCI---LNTGKATRRTQPHEEISAPDLSI 106
           N  W + +SN+   + LD+VD+ K  I      G+ TR  Q H  I     S+
Sbjct: 223 NTWWRTCVSNNPSLQFLDIVDRAKTTIDASKQRGETTRIDQMHGSIRLKTTSV 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,169
Number of Sequences: 37544
Number of extensions: 307275
Number of successful extensions: 714
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)