Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00090
(775 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1792| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-11) 38 0.007
SB_1356| Best HMM Match : GCV_T (HMM E-Value=5.1e-40) 38 0.007
SB_84| Best HMM Match : PHD (HMM E-Value=0.0019) 38 0.007
SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032) 37 0.016
SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05) 36 0.036
SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05) 36 0.036
SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0) 36 0.036
SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0) 36 0.048
SB_31295| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-11) 36 0.048
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) 36 0.048
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.048
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05) 35 0.064
SB_15614| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_11125| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7) 34 0.15
SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014) 34 0.15
SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14) 33 0.19
SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18) 33 0.26
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041) 33 0.34
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_22310| Best HMM Match : Exo_endo_phos (HMM E-Value=0.12) 32 0.45
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.78
SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08) 31 0.78
SB_17643| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00047) 31 1.0
SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096) 31 1.0
SB_59041| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_20258| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-16) 30 1.8
SB_48818| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00029) 30 1.8
SB_42532| Best HMM Match : Exo_endo_phos (HMM E-Value=7.2e-16) 30 1.8
SB_49193| Best HMM Match : Exo_endo_phos (HMM E-Value=0.025) 29 3.2
SB_35561| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00092) 29 3.2
SB_576| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.2
SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_2904| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08) 29 4.2
SB_41509| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05) 29 4.2
SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062) 29 4.2
SB_16210| Best HMM Match : PHD (HMM E-Value=0.076) 29 4.2
SB_39504| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00014) 29 5.5
SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_48294| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10) 28 7.3
SB_22023| Best HMM Match : RVT_1 (HMM E-Value=0.00027) 28 7.3
SB_6902| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_33773| Best HMM Match : RVT_thumb (HMM E-Value=4) 28 7.3
SB_8966| Best HMM Match : SAP (HMM E-Value=1.6e-08) 28 7.3
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 28 9.6
>SB_1792| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-11)
Length = 476
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -1
Query: 631 NCRSISSKKCDIIYLANKYQPFLISLQETWLRP 533
NCRS+ +K DI + N++QP ++ E+WL+P
Sbjct: 215 NCRSVKNKIADIAVVINEHQPDIVFGNESWLKP 247
>SB_1356| Best HMM Match : GCV_T (HMM E-Value=5.1e-40)
Length = 1006
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -1
Query: 631 NCRSISSKKCDIIYLANKYQPFLISLQETWLRP 533
NCRS+ +K DI + N++QP ++ E+WL+P
Sbjct: 731 NCRSVKNKIADIAVVINEHQPDIVFGNESWLKP 763
>SB_84| Best HMM Match : PHD (HMM E-Value=0.0019)
Length = 402
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -1
Query: 631 NCRSISSKKCDIIYLANKYQPFLISLQETWLRP 533
NCRS+ +K DI + N++QP ++ E+WL+P
Sbjct: 309 NCRSVKNKIADIAVVINEHQPDIVFGNESWLKP 341
>SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032)
Length = 296
Score = 37.1 bits (82), Expect = 0.016
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Frame = -3
Query: 515 SQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIP 345
S S R+DRSDGYGGV L +K ++S + N + I ++IN +V + Y P
Sbjct: 132 SNYSVFRKDRSDGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRRKHVYIGAFYNP 190
Query: 344 HPTSSVYNEIESIFSIFP----NPILIM-GDFN 261
+ +E++ S N ++ + GDFN
Sbjct: 191 DSSCEALDELDRSLSKLQRKSGNSVIYLGGDFN 223
>SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 696
Score = 35.9 bits (79), Expect = 0.036
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = -3
Query: 515 SQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIP 345
S S R+DR DGYGGV L +K ++S + N + I ++IN +V + Y P
Sbjct: 257 SNYSVFRKDRPDGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRTKHVYIGAFYNP 315
Query: 344 HPTSSVYNEIESIFSIFP----NPILIM-GDFN 261
+ +E++ S N ++ + GDFN
Sbjct: 316 DSSCEALDELDRSLSKLQRKSGNSVIYLGGDFN 348
>SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 822
Score = 35.9 bits (79), Expect = 0.036
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = -3
Query: 515 SQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIP 345
S S R+DR DGYGGV L +K ++S + N + I ++IN +V + Y P
Sbjct: 257 SNYSVFRKDRPDGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRTKHVYIGAFYNP 315
Query: 344 HPTSSVYNEIESIFSIFP----NPILIM-GDFN 261
+ +E++ S N ++ + GDFN
Sbjct: 316 DSSCEALDELDRSLSKLQRKSGNSVIYLGGDFN 348
>SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1126
Score = 35.9 bits (79), Expect = 0.036
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Frame = -3
Query: 515 SQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIP 345
S S R+DR+DGYGGV L +K ++S + N + I ++IN +V + Y P
Sbjct: 239 SNYSVFRKDRTDGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRRKHVYIGAFYNP 297
Query: 344 HPTSSVYNEIESIFSIFP----NPILIM-GDFN 261
+ +E++ S N ++ + GDFN
Sbjct: 298 DSSCEALDELDRSLSKLQRKSGNSVIYLGGDFN 330
>SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 913
Score = 35.9 bits (79), Expect = 0.036
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = -3
Query: 515 SQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIP 345
S S R+DR DGYGGV L +K ++S + N + I ++IN +V + Y P
Sbjct: 236 SNYSVFRKDRPDGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRTKHVYIGAFYNP 294
Query: 344 HPTSSVYNEIESIFSIFP----NPILIM-GDFN 261
+ +E++ S N ++ + GDFN
Sbjct: 295 DSSCEALDELDRSLSKLQRKSGNSVIYLGGDFN 327
>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1273
Score = 35.5 bits (78), Expect = 0.048
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 631 NCRSISSKKCDIIYLANKYQPFLISLQETWLR 536
NCRS+ +K DI + N++QP ++ E+WL+
Sbjct: 166 NCRSVKNKIADIAVVINEHQPDIVFGNESWLK 197
>SB_31295| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-11)
Length = 548
Score = 35.5 bits (78), Expect = 0.048
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 631 NCRSISSKKCDIIYLANKYQPFLISLQETWLR 536
NCRS+ +K DI + N++QP ++ E+WL+
Sbjct: 166 NCRSVKNKIADIAVVINEHQPDIVFGNESWLK 197
>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
Length = 1241
Score = 35.5 bits (78), Expect = 0.048
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 631 NCRSISSKKCDIIYLANKYQPFLISLQETWLR 536
NCRS+ +K DI + N++QP ++ E+WL+
Sbjct: 15 NCRSVKNKIADIAVVINEHQPDIVFGNESWLK 46
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 35.5 bits (78), Expect = 0.048
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 631 NCRSISSKKCDIIYLANKYQPFLISLQETWLR 536
NCRS+ +K DI + N++QP ++ E+WL+
Sbjct: 215 NCRSVKNKIADIAVVINEHQPDIVFGNESWLK 246
>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 790
Score = 35.1 bits (77), Expect = 0.064
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = -3
Query: 515 SQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIP 345
S S R+DR DGYGGV L +K ++S + N + I ++IN +V + Y P
Sbjct: 253 SNYSVFRKDRPDGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRRKHVYIGAFYNP 311
Query: 344 HPTSSVYNEIESIFSIFP----NPILIM-GDFN 261
+ +E++ S N ++ + GDFN
Sbjct: 312 DSSCEALDELDRSLSKLQRKSGNSVIYLGGDFN 344
>SB_15614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -3
Query: 515 SQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIP 345
S S R+DR DGYGGV L +K ++S + N + I ++IN +V + Y P
Sbjct: 135 SNYSVFRKDRPDGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRRKHVYIGAFYNP 193
Query: 344 HPTSSVYNEIESIFS 300
+ +E++ S
Sbjct: 194 DSSCEALDELDRSLS 208
>SB_11125| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7)
Length = 547
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = -3
Query: 497 REDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIPHPTSSV 327
R+DR DGYGGV L +K ++S + N + I ++IN +V + Y P +
Sbjct: 3 RKDRPDGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRTKHVYIGAFYNPDSSCEA 61
Query: 326 YNEIESIFSIFP----NPILIM-GDFN 261
+E++ S N ++ + GDFN
Sbjct: 62 LDELDRSLSKLQRKSGNSVIYLGGDFN 88
>SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014)
Length = 413
Score = 33.9 bits (74), Expect = 0.15
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Frame = -3
Query: 515 SQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIP 345
S S R+DR DGYGGV L K ++S + N + I ++IN +V + Y P
Sbjct: 173 SNYSVFRKDRPDGYGGVLLAFK-DLSCHELYKLNSDCETVWIKVSINRRKHVYIGAFYNP 231
Query: 344 HPTSSVYNEIESIFSIFP----NPILIM-GDFN 261
+ +E++ S N ++ + GDFN
Sbjct: 232 DSSCEALDELDRSLSKLQRKSGNSVIYLGGDFN 264
>SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14)
Length = 832
Score = 33.5 bits (73), Expect = 0.19
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Frame = -3
Query: 497 REDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIPHPTSSV 327
R+DR DGYGGV L +K ++S + N + I ++IN +V + Y P +
Sbjct: 3 RKDRPDGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRRKHVYIGAFYNPDSSCEA 61
Query: 326 YNEIESIFS----IFPNPILIM-GDFN 261
+E++ S + N ++ + GDFN
Sbjct: 62 LDELDRSLSKLQRMSGNSVIYLGGDFN 88
>SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)
Length = 1061
Score = 33.1 bits (72), Expect = 0.26
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = -3
Query: 515 SQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIP 345
S S R+DR +GYGGV L +K ++S + N + I ++IN +V + Y P
Sbjct: 325 SNYSVFRKDRPNGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRRKHVYIGAFYNP 383
Query: 344 HPTSSVYNEIESIFSIFP----NPILIM-GDFN 261
+ +E++ S N ++ + GDFN
Sbjct: 384 DSSCEALDELDRSLSKLQRKSGNSVIYLGGDFN 416
>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
Length = 988
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 485 SDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIP 345
+DG G ALL K ++ + IP H SD ++ + N YV L +P
Sbjct: 192 ADGLGNGALLAKFDVLAAYRNIPVHPSDRYLLGMKWRNYFYVDLALP 238
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 32.3 bits (70), Expect = 0.45
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 515 SQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSL-YIPHP 339
S S R+DR DGYGGV L +K ++S + N + I ++IN +V + +P
Sbjct: 1404 SNYSVFRKDRPDGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRRKHVYIGAFSNP 1462
Query: 338 TSS 330
SS
Sbjct: 1463 DSS 1465
>SB_22310| Best HMM Match : Exo_endo_phos (HMM E-Value=0.12)
Length = 633
Score = 32.3 bits (70), Expect = 0.45
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Frame = -3
Query: 563 NFFTRNLATSRF*F*NSQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSS-DFSIIA 387
N F NL TS N +S + R GG L+KNNI+ + N S ++ +
Sbjct: 205 NHFLSNLITS---LGNELDSFVHIPRKYSRGGGVGLMKNNITVKKQAHTNFKSFEYLDVI 261
Query: 386 ITI--NNICYVSLY-IPHPTSSVYN------EIESI---FSIFPNPILIMGDFNAQM 252
+T + V++Y +P T + N E ++ ++FP +LI+GDFN M
Sbjct: 262 VTCPAGSTRIVNVYRLPPSTVNKLNSAIFFEEFSTLAVQLAVFPGNLLIVGDFNLHM 318
>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1800
Score = 31.9 bits (69), Expect = 0.59
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Frame = -3
Query: 497 REDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITI----NNICYVSLY-IPHPTS 333
R+DR G GG+ + ++ + +P ++AI NN+ +V +Y P+PT
Sbjct: 1177 RKDRKKGGGGLMAYFSSKMASRKVKLPKQYKWLEVLAINAIINNNNVLFVGIYRSPNPTG 1236
Query: 332 SVY-----NEIESI---FSIFPNPILIMGDFN 261
+ Y E+ ++ S+ N +++ GD N
Sbjct: 1237 TDYYRKLEEELHAVCMWASMECNTLVLTGDLN 1268
>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 31.9 bits (69), Expect = 0.59
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Frame = -3
Query: 497 REDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITI----NNICYVSLY-IPHPTS 333
R+DR G GG+ + ++ + +P ++AI NN+ +V +Y P+PT
Sbjct: 920 RKDRKKGGGGLMAYFSSKMASCKVKLPKQYKLLEVLAINAIINNNNVLFVGIYRSPNPTG 979
Query: 332 SVY-----NEIESI---FSIFPNPILIMGDFN 261
+ Y E+ ++ S+ N +++ GD N
Sbjct: 980 TDYYRKLEEELHAVCMWASMECNTLVLAGDLN 1011
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 31.5 bits (68), Expect = 0.78
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = -3
Query: 497 REDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITI----NNICYVSLY-IPHPTS 333
R+DR G GG+ + ++ + +P ++AI NN+ +V +Y P+PT
Sbjct: 272 RKDRKKGGGGLMAYFSSKMASRKVKLPKQYKLLEVLAINAIINNNNVLFVGIYRSPNPTG 331
Query: 332 SVY 324
+ Y
Sbjct: 332 TDY 334
>SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08)
Length = 438
Score = 31.5 bits (68), Expect = 0.78
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Frame = -3
Query: 497 REDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITI----NNICYVSLY-IPHPTS 333
R+DR G GG+ + ++ + +P ++AI NN+ +V +Y P+PT
Sbjct: 272 RKDRKKGGGGLMAYFSSKMASRKVKLPKQYRLLEVLAINAIINNNNVLFVGIYRSPNPTG 331
Query: 332 SVY-----NEIESI---FSIFPNPILIMGDFN 261
+ Y E+ ++ S+ N +++ GD N
Sbjct: 332 TDYYRKLEEELHAVCMWASMECNTLVLTGDLN 363
>SB_17643| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00047)
Length = 305
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Frame = -3
Query: 497 REDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITI----NNICYVSLY-IPHPTS 333
R+DR G GG+ + ++ + +P ++AI NN+ +V +Y P+PT
Sbjct: 146 RKDRKKGGGGLMANFSSKMASRKVKLPKQYKLLEVLAINAIINNNNVLFVGIYRSPNPTG 205
Query: 332 SVY-----NEIESI---FSIFPNPILIMGDFN 261
+ Y E+ ++ S+ N +++ GD N
Sbjct: 206 TDYYCKLEEELHAVCMWASMECNTLVLTGDLN 237
>SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096)
Length = 345
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = -3
Query: 515 SQNSCIREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYV---SLYIP 345
S S R+ R DGYGGV L +K ++S + N + I ++IN +V + Y P
Sbjct: 257 SNYSVFRKGRPDGYGGVLLAVK-DLSCHELYELNSDCETVWIKVSINRRKHVYIGAFYNP 315
Query: 344 HPTSSVYNEIESIFS 300
+ +E++ S
Sbjct: 316 DSSCEALDELDRSLS 330
>SB_59041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Frame = -3
Query: 503 CIREDRS---DGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIP---H 342
C R DRS +GYGGVA ++++++F N + I C +L
Sbjct: 204 CARRDRSGTKEGYGGVATFVRDDLAFRLRNDINTGGQECLWIELIREKCKPTLICSAYRA 263
Query: 341 PTSSVYNEIESIFSIFP------NPILIMGDFNAQM 252
P + + + I S+ P + ++I+GD NA +
Sbjct: 264 PNADLTSFISSLQDSMPAIDLDKSDVVILGDLNANL 299
>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2362
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Frame = -3
Query: 503 CIREDRS---DGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIP---H 342
C R DRS +GYGGVA ++++++F N + I C +L
Sbjct: 1693 CARRDRSGTKEGYGGVATFVRDDLAFRLRNDINTGGQECLWIELIREKCKPTLICSAYRA 1752
Query: 341 PTSSVYNEIESIFSIFP------NPILIMGDFNAQM 252
P + + + I S+ P + ++I+GD NA +
Sbjct: 1753 PDADLTSFISSLQDSMPAIDLDNSDVVILGDLNANL 1788
>SB_20258| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-16)
Length = 525
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Frame = -3
Query: 503 CIREDRS---DGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIP---H 342
C R DRS +GYGGVA ++++++F N + I C +L
Sbjct: 93 CARRDRSGTKEGYGGVATFVRDDLAFRLRNDINTGGQECLWIELIREKCKPTLICSAYRA 152
Query: 341 PTSSVYNEIESIFSIFP------NPILIMGDFNAQM 252
P + + + I S+ P + ++I+GD NA +
Sbjct: 153 PDADLTSFISSLQDSMPAIDLDKSDVVILGDLNANL 188
>SB_48818| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00029)
Length = 318
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Frame = -3
Query: 503 CIREDRS---DGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIP---H 342
C R DRS +GYGGVA ++++++F N + I C +L
Sbjct: 33 CARRDRSGTKEGYGGVATFVRDDLAFRLRNDINTGGQECLWIELIREKCKPTLICSAYRA 92
Query: 341 PTSSVYNEIESIFSIFP------NPILIMGDFNAQM 252
P + + + I S+ P + ++I+GD NA +
Sbjct: 93 PDADLTSFISSLQDSMPAIDLDKSDVVILGDLNANL 128
>SB_42532| Best HMM Match : Exo_endo_phos (HMM E-Value=7.2e-16)
Length = 399
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Frame = -3
Query: 503 CIREDRS---DGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIP---H 342
C R DRS +GYGGVA ++++++F N + I C +L
Sbjct: 93 CARRDRSGTKEGYGGVATFVRDDLAFRLRNDINTGGQECLWIELIREKCKPTLICSAYRA 152
Query: 341 PTSSVYNEIESIFSIFP------NPILIMGDFNAQM 252
P + + + I S+ P + ++I+GD NA +
Sbjct: 153 PDADLTSFISSLQDSMPAIDLDNSDVVILGDLNANL 188
>SB_49193| Best HMM Match : Exo_endo_phos (HMM E-Value=0.025)
Length = 236
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 652 QSQIIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLR 536
Q +I+ N + ++S ++++ N+Y +I++ ETWL+
Sbjct: 35 QLKIMHINTQCMTSTFDSLLHMVNRYSLDIITMSETWLK 73
>SB_35561| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00092)
Length = 813
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 652 QSQIIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLR 536
Q +I+ N + ++S ++++ N+Y +I++ ETWL+
Sbjct: 201 QLKIMHINTQCMTSTFDSLLHMVNRYSLDIITMSETWLK 239
>SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1444
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 652 QSQIIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLR 536
Q +I+ N + ++S ++++ N+Y +I++ ETWL+
Sbjct: 303 QLKIMHINTQCMTSTFDSLLHMVNRYSLDIITMSETWLK 341
>SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 652 QSQIIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLR 536
Q +I+ N + ++S ++++ N+Y +I++ ETWL+
Sbjct: 169 QLKIMHINTQCMTSTFDSLLHMVNRYSLDIITMSETWLK 207
>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 652 QSQIIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLR 536
Q +I+ N + ++S ++++ N+Y +I++ ETWL+
Sbjct: 152 QLKIMHINTQCMTSTFDSLLHMVNRYSLDIITMSETWLK 190
>SB_2904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = -3
Query: 497 REDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAITI----NNICYVSLY-IPHPTS 333
R+DR G GG+ + ++ + +P ++AI NN+ +V +Y P+P
Sbjct: 22 RKDRKKGGGGLMAYFSSKMASRKVKLPKQYKLLEVLAINAIINNNNVLFVGIYRSPNPAG 81
Query: 332 SVY 324
+ Y
Sbjct: 82 TDY 84
>SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)
Length = 993
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = -3
Query: 500 IREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAIT--INNICYVS-LYIPHPTSS 330
IR+DR+ GGV L ++++I++ + S + + IT + +VS +Y P
Sbjct: 515 IRKDRNRNGGGVCLYLRSSINYCIRNLVPDSVEAVCVEITKPHSRPFFVSIIYRPESPID 574
Query: 329 VYNEIESIFSIFPN---PILIMGDFN 261
+N++E + + +I+GD N
Sbjct: 575 YFNDLEQLIKAVDDVNKEHVILGDLN 600
>SB_41509| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05)
Length = 670
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = -3
Query: 500 IREDRSDGYGGVALLIKNNISFSQFTIPNHSSDFSIIAIT--INNICYVS-LYIPHPTSS 330
IR+DR+ GGV L ++++I++ + S + + IT + +VS +Y P
Sbjct: 396 IRKDRNRNGGGVCLYLRSSINYCIRNLVPDSVEAVCVEITKPHSRPFFVSIIYRPESPID 455
Query: 329 VYNEIESIFSIFPN---PILIMGDFN 261
+N++E + + +I+GD N
Sbjct: 456 YFNDLEQLIKAVDDVNKEHVILGDLN 481
>SB_25392| Best HMM Match : PHD (HMM E-Value=0.0062)
Length = 485
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 652 QSQIIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLR 536
Q +I+ N + ++S ++++ N+Y +I++ ETWL+
Sbjct: 388 QLKIMHINTQFMTSTFDSLLHMVNRYSLDIITMSETWLK 426
>SB_16210| Best HMM Match : PHD (HMM E-Value=0.076)
Length = 280
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -1
Query: 652 QSQIIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLR 536
Q +I+ N + ++S ++++ N+Y +I++ ETWL+
Sbjct: 182 QLKIMHINTQFMTSTFDSLLHMVNRYSLDIITMSETWLK 220
>SB_39504| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00014)
Length = 217
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 619 ISSKKCDIIYLANKYQPFLISLQETWLRP 533
+ +K DI + N++QP ++ E+WL+P
Sbjct: 2 VKNKIADIAVVINEHQPDIVFGNESWLKP 30
>SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 285 DLNHGRFQCSNVAWGSSISNHYGSRLLD 202
DL+ G +C + +GS ++N Y SR+ D
Sbjct: 78 DLDFGSGRCHGLPYGSMVTNKYASRVND 105
>SB_48294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 473 GGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIP 345
G A + K ++ + IP H +D++++ + + YV LY+P
Sbjct: 268 GRGAFMAKTDLKSAFRLIPIHPNDWNLLGVRWESRYYVDLYLP 310
>SB_26795| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)
Length = 609
Score = 28.3 bits (60), Expect = 7.3
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Frame = -3
Query: 500 IREDRSDGYGGVALLIKNNISFS-QFTIPNHSSDFSIIAITINNI--CYVSLYIPHPTSS 330
IR DR+ GGV + IK+++S + + + + + II I N ++ + P SS
Sbjct: 226 IRSDRNTRGGGVCIYIKSDLSHTLRSDLADPYLEMLIIEIKKPNTKPFLIATWYRPPKSS 285
Query: 329 V--YNEIESIFSIFPN---PILIMGDFN 261
V + E + S + P++++GD N
Sbjct: 286 VKLFESFEKVISHIDSLNYPLILLGDVN 313
>SB_22023| Best HMM Match : RVT_1 (HMM E-Value=0.00027)
Length = 364
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 473 GGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIP 345
G A + K ++ + IP H +D++++ + + YV LY+P
Sbjct: 234 GKGAFMAKTDLKSAFRLIPIHPNDWNLLGVRWESRYYVDLYLP 276
>SB_6902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 473 GGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIP 345
G A + K ++ + IP H +D++++ + + YV LY+P
Sbjct: 90 GKGAFMAKTDLKSAFRLIPIHPNDWNLLGVRWESRYYVDLYLP 132
>SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 473 GGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIP 345
G A + K ++ + IP H +D++++ + + YV LY+P
Sbjct: 236 GKGAFMAKTDLKSAFRLIPIHPNDWNLLGVRWESRYYVDLYLP 278
>SB_33773| Best HMM Match : RVT_thumb (HMM E-Value=4)
Length = 282
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 473 GGVALLIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIP 345
G A + K ++ + IP H +D++++ + + YV LY+P
Sbjct: 26 GKGAFMAKTDLKSAFRLIPIHPNDWNLLGVRWESRYYVDLYLP 68
>SB_8966| Best HMM Match : SAP (HMM E-Value=1.6e-08)
Length = 696
Score = 28.3 bits (60), Expect = 7.3
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Frame = -3
Query: 500 IREDRSDGYGGVALLIKNNISF--SQFTIPNHSSDFSIIAIT--INNICYVS-LYIPHPT 336
IR+DR+ GGV L ++++I++ +P+ S + + IT + +VS +Y P
Sbjct: 482 IRKDRNRNGGGVCLYLRSSINYCIRNDRVPD-SVEAVCVEITKPHSRPFFVSIIYRPESP 540
Query: 335 SSVYNEIESIFSIFPN---PILIMGDFN 261
+N++E + + +I+GDFN
Sbjct: 541 IDYFNDLEQLIKAVDDVNKEHVILGDFN 568
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 370 MLLMVMAIIEKSEL*FGIVN*EKLILFLMRSATPPYPSDLSSRIQ 504
M++MVMA+I S FG++ L + + PP P S+RIQ
Sbjct: 784 MMMMVMAMILSSSE-FGVITVLFLAVVIYFPDKPPLPPSHSARIQ 827
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 285 DLNHGRFQCSNVAWGSSISNHYGSRLLDMVDKN 187
D NHGR + WG +HY R D D++
Sbjct: 1171 DYNHGRSRYPPSEWGPDADSHYDRRHDDRWDRH 1203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,948,263
Number of Sequences: 59808
Number of extensions: 361085
Number of successful extensions: 866
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -