Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00090
(775 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 56 5e-08
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 54 2e-07
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 40 0.004
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 40 0.004
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 36 0.062
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 36 0.062
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 33 0.33
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 33 0.33
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 33 0.33
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 33 0.33
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 32 0.76
X80028-1|CAA56332.1| 1126|Drosophila melanogaster dhem2 protein. 29 9.4
AY118579-1|AAM49948.1| 1126|Drosophila melanogaster LD43495p pro... 29 9.4
AE014296-3665|AAF51820.1| 1126|Drosophila melanogaster CG5837-PA... 29 9.4
AE014296-1817|AAN11914.1| 573|Drosophila melanogaster CG32058-P... 29 9.4
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 56.0 bits (129), Expect = 5e-08
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = -2
Query: 246 WGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPNLASIVSWNT 67
WGS +N G ++ ++ +N +LN G T + H + D+S+ +P +A + SW+
Sbjct: 143 WGSPRTNTRGKKIETVILENSLIVLNDGSPTHLST-HNTFTHIDISLISPQIAHMCSWSI 201
Query: 66 LSSSYGSDHFPIVINFPIAT 7
+ +GSDHFPI I+ T
Sbjct: 202 SDNLHGSDHFPITIHINTPT 221
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 54.4 bits (125), Expect = 2e-07
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = -2
Query: 309 NFFYISQS-DLNHGRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHE 133
N F I Q+ L G F + WGS +N G +D N IL K+ H
Sbjct: 117 NTFNIQQTPSLITGDFNGWHHPWGSPTTNKRGKITHRFID-NMHLILLNDKSPTHFSTHN 175
Query: 132 EISAPDLSICTPNLASIVSWNTLSSSYGSDHFPIVIN-FP 16
+ DL++C+P LA W L+ +GSDHFPI+ FP
Sbjct: 176 TYTHIDLTLCSPILAPHAKWKILNDLHGSDHFPIITTLFP 215
Score = 36.7 bits (81), Expect = 0.035
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 643 IIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLRPGFNFRIP 512
IIQWN + + ++ L KY P +ISLQET ++ N P
Sbjct: 5 IIQWNLKGYLNNYSHLLILIKKYSPHIISLQETHIQYTNNIPTP 48
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 39.9 bits (89), Expect = 0.004
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPN 94
G F + AW + +N +G L ++ D K+ IL + T H+ A L +C N
Sbjct: 160 GDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPHNHKA-KASTLDLCLTN 218
Query: 93 LASIVSWNTLSSSYGSDHFPIVINF 19
+ + ++ + SDH P+VI +
Sbjct: 219 IPNQLANPAVMQELSSDHLPVVIKY 243
Score = 36.7 bits (81), Expect = 0.035
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = -1
Query: 658 MDQSQIIQWNCRSISSKKCDIIYLANKYQPFLISLQETWLRPGFNFRIPKTLVF 497
+D I+ WN R++ +K+ ++I + + ETWL F IP+ ++
Sbjct: 9 IDNLNIMAWNARAVRNKRIELIKFLENNHIHIALINETWLTHSDRFNIPEYTIY 62
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 39.9 bits (89), Expect = 0.004
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILNTGKATRRTQPHEEISAPDLSICTPN 94
G F + AW + +N +G L ++ D K+ IL + T H+ A L +C N
Sbjct: 108 GDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPHNHKA-KASTLDLCLTN 166
Query: 93 LASIVSWNTLSSSYGSDHFPIVINF 19
+ + ++ + SDH P+VI +
Sbjct: 167 IPNQLANPAVMQELSSDHLPVVIKY 191
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 35.9 bits (79), Expect = 0.062
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = -3
Query: 473 GGVALLIKNNISFSQFTIPNHSSDFSIIAI----TINNICYVSLYIPHPTSSVYNEIESI 306
GG A++IK+ + S T P ++D I + ++ + ++Y+P + ++ +S+
Sbjct: 67 GGSAVIIKSRLCHSPLT-PISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKSM 125
Query: 305 FSIFPNPILIMGDFNAQ 255
F+ N + GD+NA+
Sbjct: 126 FAALGNKFIAGGDYNAK 142
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 35.9 bits (79), Expect = 0.062
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = -3
Query: 473 GGVALLIKNNISFSQFTIPNHSSDFSIIAI----TINNICYVSLYIPHPTSSVYNEIESI 306
GG A++IK+ + S T P ++D I + ++ + ++Y+P + ++ +S+
Sbjct: 67 GGSAVIIKSRLCHSPLT-PISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKSM 125
Query: 305 FSIFPNPILIMGDFNAQ 255
F+ N + GD+NA+
Sbjct: 126 FAALGNKFIAGGDYNAK 142
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 33.5 bits (73), Expect = 0.33
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWC-ILNTGKATRRTQPHE---EISAPDLSI 106
G + + WG + + G+ L + V + I+ TG AT PH+ SA D SI
Sbjct: 36 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHF--PHDTRKNPSAIDFSI 93
Query: 105 CTPNLASIVSWNTLSSSYGSDHFPIVINFPIATSS 1
C L + + S+ SDH PI++ + TS+
Sbjct: 94 CK-GLGRLEKRISSSADLSSDHLPILLEINLDTST 127
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.5 bits (73), Expect = 0.33
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWC-ILNTGKATRRTQPHE---EISAPDLSI 106
G + + WG + + G+ L + V + I+ TG AT PH+ SA D SI
Sbjct: 152 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHF--PHDTRKNPSAIDFSI 209
Query: 105 CTPNLASIVSWNTLSSSYGSDHFPIVINFPIATSS 1
C L + + S+ SDH PI++ + TS+
Sbjct: 210 CK-GLGRLEKRISSSADLSSDHLPILLEINLDTST 243
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 33.5 bits (73), Expect = 0.33
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWC-ILNTGKATRRTQPHE---EISAPDLSI 106
G + + WG + + G+ L + V + I+ TG AT PH+ SA D SI
Sbjct: 114 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHF--PHDTRKNPSAIDFSI 171
Query: 105 CTPNLASIVSWNTLSSSYGSDHFPIVINFPIATSS 1
C L + + S+ SDH PI++ + TS+
Sbjct: 172 CK-GLGRLEKRISSSADLSSDHLPILLEINLDTSN 205
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 33.5 bits (73), Expect = 0.33
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = -2
Query: 273 GRFQCSNVAWGSSISNHYGSRLLDMVDKNKWC-ILNTGKATRRTQPHE---EISAPDLSI 106
G + + WG + + G+ L + V + I+ TG AT PH+ SA D SI
Sbjct: 152 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHF--PHDTRKNPSAIDFSI 209
Query: 105 CTPNLASIVSWNTLSSSYGSDHFPIVINFPIATSS 1
C L + + S+ SDH PI++ + TS+
Sbjct: 210 CK-GLGRLEKRISSSADLSSDHLPILLEINLDTSN 243
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 32.3 bits (70), Expect = 0.76
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = -3
Query: 473 GGVALLIKNNISFSQFT-IPNHSSDFS--IIAITINNICYVSLYIPHPTSSVYNEIESIF 303
GG A+LIKN+++ T I + +I + I + ++Y P + +E + I
Sbjct: 66 GGAAILIKNSLAHFPLTPIATAKVQLAPAVIETALGPISFGAVYCPPRFAWTTDEFKDIL 125
Query: 302 SIFPNPILIMGDFNA 258
F ++ GD+NA
Sbjct: 126 EEFQTKFIVAGDWNA 140
>X80028-1|CAA56332.1| 1126|Drosophila melanogaster dhem2 protein.
Length = 1126
Score = 28.7 bits (61), Expect = 9.4
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -3
Query: 458 LIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIPHPTSSVYNEIESIFSIFPNPIL 279
L +N SF + TI HS++ +A INNI + +L+ S + + ++ ++ + +L
Sbjct: 1005 LARNENSFYRATIDGHSNNTHCMAAAINNI-FGALFTICGQSDMEDRMKEFLALASSSLL 1063
Query: 278 IMG 270
+G
Sbjct: 1064 RLG 1066
>AY118579-1|AAM49948.1| 1126|Drosophila melanogaster LD43495p protein.
Length = 1126
Score = 28.7 bits (61), Expect = 9.4
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -3
Query: 458 LIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIPHPTSSVYNEIESIFSIFPNPIL 279
L +N SF + TI HS++ +A INNI + +L+ S + + ++ ++ + +L
Sbjct: 1005 LARNENSFYRATIDGHSNNTHCMAAAINNI-FGALFTICGQSDMEDRMKEFLALASSSLL 1063
Query: 278 IMG 270
+G
Sbjct: 1064 RLG 1066
>AE014296-3665|AAF51820.1| 1126|Drosophila melanogaster CG5837-PA
protein.
Length = 1126
Score = 28.7 bits (61), Expect = 9.4
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -3
Query: 458 LIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIPHPTSSVYNEIESIFSIFPNPIL 279
L +N SF + TI HS++ +A INNI + +L+ S + + ++ ++ + +L
Sbjct: 1005 LARNENSFYRATIDGHSNNTHCMAAAINNI-FGALFTICGQSDMEDRMKEFLALASSSLL 1063
Query: 278 IMG 270
+G
Sbjct: 1064 RLG 1066
>AE014296-1817|AAN11914.1| 573|Drosophila melanogaster CG32058-PA
protein.
Length = 573
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 135 HGVVCDELPYQYLKYTIYSYRPYPTVESH 221
HG + L ++ ++Y+Y+PYP VE H
Sbjct: 124 HGFI-HVLALNFMNGSLYTYKPYPKVEVH 151
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,791,938
Number of Sequences: 53049
Number of extensions: 534011
Number of successful extensions: 1144
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3581842374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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