Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00090
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    48   7e-06
AC024791-33|AAF60669.1|  175|Caenorhabditis elegans Human/fissio...    32   0.40 

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = -2

Query: 309 NFFYISQSDLNHGRFQCSNVAWGSSISNHY-GSRLLDMVDKNKWCILNTGKATRRTQPHE 133
           N F      +  G     + AW S  S    G  L +++D +   I+   +   R   + 
Sbjct: 26  NIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRADTYS 85

Query: 132 EISAPDLSICTPNLASIVSWNTLSSSYGSDHFPI 31
            IS+PD++ICT +LA+   W+TL    GSDH P+
Sbjct: 86  -ISSPDITICTADLATKCHWSTL-YKLGSDHIPM 117


>AC024791-33|AAF60669.1|  175|Caenorhabditis elegans Human/fission
           yeast mis (minichromosomestability) homolog protein 12
           protein.
          Length = 175

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 318 NRINFFYISQSDLNHGRFQCSNVAWGSSISNHYGSRLLDMVDKNKWCILN 169
           N+I+FF  S    +   F     AW    SN + + L  + DK++ C+L+
Sbjct: 12  NQISFFGFSAGSFSDSIFNIYVDAWEEVCSNEFKNSLKKLTDKDRLCLLS 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,326,680
Number of Sequences: 27780
Number of extensions: 292558
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)