Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00090
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.6  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 292 GNIEKIDSISLYTLEVGCGIYR 357
           G +  ++    YT+ +G G+YR
Sbjct: 368 GTVHDVEFPGXYTMVIGSGVYR 389


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/39 (15%), Positives = 19/39 (48%)
 Frame = -3

Query: 386 ITINNICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMG 270
           + +  +CY + ++ HP   +   +  +  I    ++++G
Sbjct: 158 LVVAEVCYFTAHVTHPRHRLCVFVAGVVFIVSGLLMLVG 196


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 277 SWEISMLKCSMGQL 236
           +WE+++LK  +GQL
Sbjct: 127 TWEVNILKSIVGQL 140


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 162 YQYLKYTIYSYRPYPTVESHND 227
           Y  + YT+ ++ P   V ++ND
Sbjct: 142 YPQVPYTVKNFHPRCAVNNYND 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,362
Number of Sequences: 438
Number of extensions: 3700
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)