Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00089
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 29 0.90
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo... 27 2.1
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 27 2.8
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 2.8
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 3.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 3.6
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 4.8
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 26 6.4
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 26 6.4
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.4
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 164 HEEYGVEAFKKCDKEGTGFITAGDFRNIM 250
+EE EAFK DK+G G+IT + +++
Sbjct: 83 NEEEVREAFKVFDKDGNGYITVEELTHVL 111
>SPMIT.08 |||mitochondrial ribosomal small
subunit|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 227
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = +1
Query: 331 KISFPYYMAFNSLLNNMELIKRVYLNATNGHRTQEVTKEEFLHSAQMMSQITP 489
++SFPYY N N +I + A + H F+ + + + TP
Sbjct: 56 EVSFPYYPLLNKNYPNPSIISNIIQKALSNHLLYSSKNYSFIVNIRALPISTP 108
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 110 DKKRLVTYPEFSQFLHDFHEEYGVEAFKKCDKEGTGFITAGDFRNIM 250
D+K+ +++ + EEY ++AF+ DK+ +G+I F + M
Sbjct: 59 DEKKFMSFVSNKLRETESEEEY-IKAFRVFDKDNSGYIETAKFADYM 104
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 525 LHHTNGRIVYNDLNSITPEQYF-KQVTRRVAEIKAVSSPEER 647
L HTN +YN+L + P K + R + EI P++R
Sbjct: 286 LRHTNINFLYNELRELLPTSISRKGIIRYLKEIYKPLDPKDR 327
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 396 GVPQRHERTPHAGGHQRGVSALRPDDESNHA 488
GV Q + R P G H S+ D+E NH+
Sbjct: 391 GVVQSNSRQPKVGFHVNNSSSGHNDNEGNHS 421
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 676 VLSRICISTPLSSGLETALISATLRVTCLKYCSGVMEF 563
+L + TP SS + S+ + L+YC+ MEF
Sbjct: 451 ILEKELARTPPSSPARNSASSSPSNIAFLEYCTSTMEF 488
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 531 HTNGRIVYNDLNSITPEQYF-KQVTRRVAEIKAVSSPE 641
H + ++V +D S TP++YF +Q TR ++ + +S+ E
Sbjct: 79 HEDDKLVGSDGVSTTPDEYFEQQSTRSRSKPRIISNKE 116
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -1
Query: 240 LKSP-AVMNPVPSLSHFLNASTP 175
L SP A + +PS+SHFLN P
Sbjct: 752 LHSPYAFFHDIPSISHFLNKCLP 774
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +3
Query: 504 IVNLCDILHHTNGRIVYNDLNSITPEQYFKQVTRRVAEIKAVSSPE 641
++ + DIL H NG + + T ++ + RV ++ +V + E
Sbjct: 607 LIEMHDILFHGNGPLEQIHMTKATARTLWEAIVERVEQVGSVRTRE 652
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 402 PQRHERTPHAGGHQRGVSALRPDDESNHAPRSGHIVNL 515
P+R ++ P + H R + PD +S+H P + V++
Sbjct: 48 PERAQKEPVSIPHGRYTWSTSPDTDSSHLPSTPPTVDI 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,355
Number of Sequences: 5004
Number of extensions: 64006
Number of successful extensions: 211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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