Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00089
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0593 + 24177897-24178182,24178442-24178509,24178617-241788... 34 0.10
01_06_1573 - 38329476-38329591,38330535-38330871 33 0.31
03_02_0341 - 7643426-7643973,7644340-7644505 31 0.71
04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876... 31 0.94
03_01_0115 - 915142-915321,915397-915631,916301-916386,916474-91... 30 2.2
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 29 2.9
05_05_0309 - 23987669-23988042,23989485-23989560 29 2.9
03_02_0817 + 11492699-11492774,11493605-11493978 29 2.9
02_05_0340 + 28105222-28105960,28106844-28106987,28107083-281072... 29 2.9
01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097 29 2.9
01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858 29 2.9
02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381... 29 3.8
11_06_0212 - 21319441-21319498,21319737-21319867,21319944-213200... 29 5.0
01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651 29 5.0
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 28 6.6
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 28 6.6
03_05_1090 + 30313176-30313292,30314162-30314236,30314938-303151... 28 6.6
01_07_0178 + 41810795-41811409 28 6.6
11_01_0782 + 6543906-6544702,6545717-6547850 28 8.8
11_01_0203 - 1610086-1610192,1610620-1610669,1610888-1611348 28 8.8
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 28 8.8
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 28 8.8
>02_04_0593 +
24177897-24178182,24178442-24178509,24178617-24178840,
24179221-24179304,24180183-24180396,24181242-24181418,
24181507-24181626,24181854-24181998,24182055-24182065,
24182222-24182314
Length = 473
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 89 VRLYFGKDKKRLVTYPEFSQFLHDFHEEYGVEAFKKCDKEGTGFITAGDF 238
V +FGKD + Y +FS FL H+E F D + + I+ DF
Sbjct: 265 VEYFFGKDGNEQLRYDKFSNFLKQLHDEIVRLEFSHYDVKSSKTISVKDF 314
>01_06_1573 - 38329476-38329591,38330535-38330871
Length = 150
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 351 HGLQFIIKQHGANQEGVPQRHERTPH-AGGHQRGVSALRPDDESNHAPRSGHIVNL 515
HGL+ ++ H + Q H R AGG S R +D S H P +G +V L
Sbjct: 67 HGLEVWMRCHAQKPKLASQAHGREAELAGGGSISRSGSREEDPSEHNPDTGDMVGL 122
>03_02_0341 - 7643426-7643973,7644340-7644505
Length = 237
Score = 31.5 bits (68), Expect = 0.71
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -1
Query: 357 GHVVRKTDLSLALRKTRGSDDFAFQILCEKMALHHIIIFLKSPAVMNPVPSLSHFL 190
GH KT ++LA + R S + A LC+ HH I L P ++ P H L
Sbjct: 130 GHDGAKTFVALAGKVHRPSAECASAFLCDPFHKHHHHIVLHPPVIVPPKHDHDHSL 185
>04_04_0419 +
25086456-25086768,25087302-25087369,25087458-25087681,
25087929-25088012,25088593-25088806,25089252-25089428,
25089526-25089645,25089865-25089991,25090104-25090130,
25090526-25091007
Length = 611
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 89 VRLYFGKDKKRLVTYPEFSQFLHDFHEEYGVEAFKKCDKEGTGFITAGDF 238
V +FG D + Y +F+ FL H+E F D + + I A DF
Sbjct: 274 VEYFFGNDGNEPLHYDKFTNFLKGLHDEIIRLEFSHYDVKSSNTIPAKDF 323
>03_01_0115 -
915142-915321,915397-915631,916301-916386,916474-916590,
917271-917591,918386-918772
Length = 441
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Frame = +1
Query: 280 DLKSKVITASGF-------PQGERKISFPYYMAFNSLLNNMELIKRVYLNATNGHRTQEV 438
DLKSKVI S F P+ ++ Y + S L ++E +K L + H E
Sbjct: 273 DLKSKVIDNSNFRNFLELVPEVRELVNDFYSSRYGSCLEHLEKLKTNLLLDIHLHDHVET 332
Query: 439 TKEEFLHSAQMMSQITPLEVDILSTCATFCT 531
+ H A + + + VD+ + A F T
Sbjct: 333 LYMDIRHKAIIQYTLPFISVDLNTMAAAFMT 363
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIM 250
EE EAF+ DK+ GFI+A + R++M
Sbjct: 83 EEELKEAFRVFDKDQNGFISAAELRHVM 110
>05_05_0309 - 23987669-23988042,23989485-23989560
Length = 149
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIM 250
EE EAF+ DK+ GFI+A + R++M
Sbjct: 83 EEELKEAFRVFDKDQNGFISAAELRHVM 110
>03_02_0817 + 11492699-11492774,11493605-11493978
Length = 149
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIM 250
EE EAF+ DK+ GFI+A + R++M
Sbjct: 83 EEELKEAFRVFDKDQNGFISAAELRHVM 110
>02_05_0340 +
28105222-28105960,28106844-28106987,28107083-28107235,
28107418-28107533,28107819-28107986,28108792-28109016,
28110445-28110483,28110497-28110592
Length = 559
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 2 GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKRLVTYPEF-SQFLHDF---HE 169
G + +DE E MRK K + E + D + Y EF + LH E
Sbjct: 411 GAITYDELKEGMRKYGSTLK---DTEIRDLMEAADVDNSGTIDYIEFIAATLHLNKLERE 467
Query: 170 EYGVEAFKKCDKEGTGFITAGDFR 241
E+ V AF DK+G+G+IT + +
Sbjct: 468 EHLVAAFSYFDKDGSGYITVDELQ 491
>01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097
Length = 171
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIM 250
EE EAF+ DK+ GFI+A + R++M
Sbjct: 83 EEELKEAFRVFDKDQNGFISAAELRHVM 110
>01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858
Length = 146
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIM 250
EE EAF+ DK+ GFI+A + R++M
Sbjct: 83 EEELKEAFRVFDKDQNGFISAAELRHVM 110
>02_05_0510 +
29637160-29637506,29637714-29637775,29638047-29638161,
29638296-29638419,29638604-29638684,29639122-29639463,
29639562-29639728,29639810-29640639,29641103-29642568
Length = 1177
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 307 SGFPQGERKISFPYYMAFNSLLNNMELIKRVYLNATNGHRTQEVTKEEFLHSAQMMSQIT 486
SG QG + A + +++ ELI++ +N G E T +EF +M + T
Sbjct: 530 SGSGQGNSENKRKNGPAGSPTISSRELIQQEVINILEGKHASENTDDEF--DLHLMEEST 587
Query: 487 PLEVDILS 510
L++D +S
Sbjct: 588 HLDIDQIS 595
>11_06_0212 -
21319441-21319498,21319737-21319867,21319944-21320033,
21320141-21320298,21320646-21320721
Length = 170
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Frame = +2
Query: 2 GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLY--FGKDKKRLVTYPEFSQFLHDFHEEY 175
G + FDEF +M+K L++ + E + + F KD ++ E S + EE
Sbjct: 62 GTIEFDEFLAIMKK-KLYENDKGDDEEELRKAFRIFDKDDNGFISRNELSMVMASLGEEM 120
Query: 176 GV----EAFKKCDKEGTGFITAGDFRNIMM 253
+ K D G + +F+ +MM
Sbjct: 121 TEDEIDDMMKAADSNNDGQVDYEEFKRVMM 150
>01_06_1085 + 34414353-34414428,34416038-34416407,34416534-34416651
Length = 187
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIM 250
EE EAF+ DK+ GFI+A + R++M
Sbjct: 83 EEELKEAFRVFDKDQNGFISATELRHVM 110
>05_03_0359 - 12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 208 RHRIHHSRRLQKYYDVVKSHLLTKDLKSKVI 300
R R+ HS+ LQK D+V SH ++ K+K+I
Sbjct: 1115 RLRLQHSKDLQKVVDIVLSHQSVRN-KTKLI 1144
>04_04_1228 + 31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 637 GLETALISATLRVTCLKYCSGVMEFKSLYTMRP 539
G T+L + + VTCLKY S ++ S+ RP
Sbjct: 1600 GRNTSLETNNVAVTCLKYASTALKVNSVAINRP 1632
>03_05_1090 +
30313176-30313292,30314162-30314236,30314938-30315181,
30315701-30315787,30315832-30315995,30316587-30316689,
30317751-30317908,30318025-30318105,30318192-30318344
Length = 393
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Frame = +2
Query: 2 GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKRLVTYPEFSQFLH------DF 163
G + +E A V R L P + E + D ++ + EF + D
Sbjct: 264 GCITLEELAAVTRSLGLE---PTDQELNDMMREVDTDGNGIIDFQEFLSLIARKMKDGDG 320
Query: 164 HEEYGVEAFKKCDKEGTGFITAGDFRNIM 250
EE EAF+ DK+ GFI+ + R +M
Sbjct: 321 DEELK-EAFEVLDKDQNGFISPTELRTVM 348
>01_07_0178 + 41810795-41811409
Length = 204
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIMM 253
E+ +EAFK D +G G ITA + R +M+
Sbjct: 120 EDELMEAFKVFDADGDGRITAEELRGVMV 148
>11_01_0782 + 6543906-6544702,6545717-6547850
Length = 976
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 158 DFHEEYGVEAFKKCDKEGTGFITAGDFRNIMMW*R 262
D+ + V KKCD + +T G F M W R
Sbjct: 341 DYIQPDSVRILKKCDGQALALLTVGQFLRKMGWPR 375
>11_01_0203 - 1610086-1610192,1610620-1610669,1610888-1611348
Length = 205
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 182 EAFKKCDKEGTGFITAGDFRNIM 250
EAF+ DK+ GFIT + R++M
Sbjct: 93 EAFRVFDKDQNGFITPDELRHVM 115
>05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 536 KWSHCVQRFELHNARAILQAGYTKSSRN*SCFQPGGERCANTNPREHV 679
KW+ C + E H+ A + TKS R+ S GER T P++ +
Sbjct: 1034 KWNKCDRERE-HSRDASAKGSGTKSGRHSSGSGRSGERKNKTKPKQKI 1080
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +2
Query: 356 PSIHY*TTWS*SRGCTSTPRT-DTARRRSPKRSFCTP 463
P H+ W G P +T RRR+P R C P
Sbjct: 828 PCHHHDRPWKSQEGAMQRPPVQETTRRRAPPRHHCRP 864
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,635,918
Number of Sequences: 37544
Number of extensions: 446360
Number of successful extensions: 1287
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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