Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00089
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             76   3e-14
SB_18908| Best HMM Match : efhand (HMM E-Value=5.5e-31)                35   0.078
SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)                   33   0.18 
SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)                32   0.42 
SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)                32   0.42 
SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)                 32   0.55 
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    30   2.2  
SB_21204| Best HMM Match : efhand (HMM E-Value=1.7e-21)                30   2.2  
SB_29670| Best HMM Match : CoaE (HMM E-Value=0)                        29   2.9  
SB_644| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.9  
SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93)            29   5.1  
SB_52925| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   9.0  
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  
SB_16925| Best HMM Match : efhand (HMM E-Value=3e-22)                  28   9.0  

>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 38/83 (45%), Positives = 50/83 (60%)
 Frame = +2

Query: 2    GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKRLVTYPEFSQFLHDFHEEYGV 181
            G V++DEF  V++KT  + K+PFN +S F+  YFG DK R V + EFS  L D  +EY  
Sbjct: 779  GSVSYDEFRNVIQKTTFYNKIPFNFDSEFISSYFGNDKTRKVPFQEFSPLLQDLEKEYQR 838

Query: 182  EAFKKCDKEGTGFITAGDFRNIM 250
            +AF    K   G ITA  F +IM
Sbjct: 839  QAFFS-SKMVEGEITAKQFSDIM 860



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 21/72 (29%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
 Frame = +1

Query: 238  QKYYDVVKS---HLLTKDLKSKVITASGFPQGERKISFPYYMAFNSLLNNMELIKRVYLN 408
            +++ D++K+   HLLT  +++ +++ +G  + +  +SF YY AFNS+L+N+  +  + + 
Sbjct: 854  KQFSDIMKTLRGHLLTPYVRAYLLSVAG-GEAKHLVSFGYYRAFNSMLDNIRTLHGMTMK 912

Query: 409  ATNGHRTQEVTK 444
               G+R +E+ K
Sbjct: 913  VAKGNRYKEIKK 924


>SB_18908| Best HMM Match : efhand (HMM E-Value=5.5e-31)
          Length = 156

 Score = 34.7 bits (76), Expect = 0.078
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
 Frame = +2

Query: 2   GLVAFDEFAE-VMRKTALHK---KLPFNMESTFVRLY--FGKDKKRLVTYPEFSQFLHDF 163
           G V+FDEF   +  K  L     K  ++     + ++  + KD    +   EF Q +H+ 
Sbjct: 64  GSVSFDEFYTWIHDKNTLQNIDDKSRYHKIRKAIEMFKKYDKDASGSIDREEFKQLMHET 123

Query: 164 HEEYGVE-AFKKCDKEGTGFITAGDFRNIMMW 256
             +  ++ A KK DK+G G I+  +F   + W
Sbjct: 124 GNKVNIDKALKKLDKDGNGQISFTEFLAWLNW 155



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
 Frame = +2

Query: 29  EVMRKTALHKKLPFNMESTFVRLYFGKDKKRLVTYPEFSQFLHD------------FHE- 169
           E+M    +   L      TF+ L   KD    V++ EF  ++HD            +H+ 
Sbjct: 35  EMMELLKVDLGLDDKQAETFL-LLVDKDGSGSVSFDEFYTWIHDKNTLQNIDDKSRYHKI 93

Query: 170 EYGVEAFKKCDKEGTGFITAGDFRNIM 250
              +E FKK DK+ +G I   +F+ +M
Sbjct: 94  RKAIEMFKKYDKDASGSIDREEFKQLM 120


>SB_7126| Best HMM Match : efhand (HMM E-Value=2e-26)
          Length = 213

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +2

Query: 110 DKKRLVTYPEFSQFL------HDFHEEYGVEAFKKCDKEGTGFITAGDFRNIM 250
           D   ++ +PEF   +       D  EE   EAF+  DK+G GFI+A + R++M
Sbjct: 23  DGNGIIDFPEFLTMMAKKMGEQDSDEEIR-EAFRVFDKDGNGFISAAELRHVM 74


>SB_36414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = +2

Query: 110 DKKRLVTYPEF----SQFLHDFHEEYGV-EAFKKCDKEGTGFITAGDFRNIM 250
           D    + +PEF    ++ + D   E  + EAF+  DK+G GFI+A + R++M
Sbjct: 59  DGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM 110


>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
          Length = 659

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIM 250
           EE   EAF+  DK+G GFI+A + R++M
Sbjct: 72  EEEIREAFRVFDKDGNGFISAAELRHVM 99


>SB_44952| Best HMM Match : efhand (HMM E-Value=3.4e-39)
          Length = 250

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 167 EEYGVEAFKKCDKEGTGFITAGDFRNIM 250
           EE   EAF+  DK+G GFI+A + R++M
Sbjct: 72  EEEIREAFRVFDKDGNGFISAAELRHVM 99


>SB_8146| Best HMM Match : efhand (HMM E-Value=1.2e-16)
          Length = 285

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 185 AFKKCDKEGTGFITAGDFRNIM 250
           AFK  DK+G GFIT GD +  M
Sbjct: 78  AFKSMDKDGDGFITFGDLKKTM 99


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 157  RLPRRIRSRSVQEMRQGRHRIHHSRRLQKYYDVVKSHLL 273
            R+ RRI+ R  + +R+ R RI   RRLQ+   + +  L+
Sbjct: 1666 RVKRRIKRRIRRRIRKARRRIRRFRRLQRRRGIKRQRLV 1704



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 154  ARLPRRIRSRSVQEMRQGRHRIHHSRRLQKYYDVVKSHLLTK 279
            AR  RR+R R  +  RQ R R +H R+L++    ++  +  K
Sbjct: 1216 ARRRRRLRKRIRRRRRQRRSRRYHRRQLRRLRRAIRRKIQRK 1257


>SB_21204| Best HMM Match : efhand (HMM E-Value=1.7e-21)
          Length = 202

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +2

Query: 143 SQFLHDFHEEYGVEAFKKCDKEGTGFITAGDFRNIM 250
           +QF+ D  EE  +EAF+  D++G G++ + D R ++
Sbjct: 116 NQFMMD--EEDMLEAFRMFDRDGRGYVMSSDLRFVL 149


>SB_29670| Best HMM Match : CoaE (HMM E-Value=0)
          Length = 315

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2   GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKRL---VTYPEFSQFLHDFHEE 172
           G  AFDE  +V  +  +      N ++    ++  K K  L   + +PE  + + D   E
Sbjct: 148 GTKAFDEIVKVFGQDVMSSDGTINRKALGAIVFSDKSKLELLNNIVWPEIMRMVEDKILE 207

Query: 173 YGVEAFKKCDKEGTGFITAG 232
           YG    K C  E    + AG
Sbjct: 208 YGDLGKKVCVIEAAVLLEAG 227


>SB_644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +2

Query: 2   GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKRLVTYPEFSQFL-----HDFH 166
           G +  +E   VMR   LH K   + E   +     KD    +  PEF + +     +D  
Sbjct: 30  GRIDAEELGIVMRSIGLHPK---DEELKAMIKQADKDGSGDIDLPEFIELMASKSKNDTT 86

Query: 167 EEYGVEAFKKCDKEGTGFITAGDFR 241
           E    EAF   DK+G G I+A + +
Sbjct: 87  ESDLREAFSLFDKDGNGLISAQEMK 111


>SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93)
          Length = 1104

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
 Frame = +3

Query: 399 VPQRHERTPHAGGHQRGVSALR-------PDDESNHAPRSGHIVNLCDILHHTNGRIVYN 557
           +  R +RTP  GG +R  + +        PD +SN+ P+     N  D +H T    V  
Sbjct: 267 ITPREDRTPQFGGRKRARTRITQTNDSDVPDIQSNNTPQEKDSSNAQDEIHQTPQSQVQ- 325

Query: 558 DLNSITPEQYFKQVTRRV 611
                 PE   ++V +RV
Sbjct: 326 -----IPESVIQEVVQRV 338


>SB_52925| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 393

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 194 KCDKEGTGFITAGDFRNIMM 253
           KCDK G GFI +GD +  +M
Sbjct: 313 KCDKCGKGFIQSGDHKKHLM 332


>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1808

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 256 VKSHLLTKDLKSKVITASGFPQGERKISFPYYMAFNSLL 372
           V S  +T   K ++++A+GF + +R ++ P    F SLL
Sbjct: 726 VASTTVTLTFKHRLVSAAGFVRSKRPVTKPSKHGFTSLL 764


>SB_16925| Best HMM Match : efhand (HMM E-Value=3e-22)
          Length = 132

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = +2

Query: 2   GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKRLVTYPEFSQFLHDF----HE 169
           G +  DE  +VMR+   +   P + E   +     KD    + + +F Q +++      E
Sbjct: 18  GSIDTDELRDVMRELGEN---PSDKEIQDMIADADKDGSGEIRFAQFMQLMNNQLRAGSE 74

Query: 170 EYGVEAFKKCDKEGTGFITAGDFRNIMM 253
              ++AF   DKEG G I   + R+++M
Sbjct: 75  AEIMDAFNAWDKEGRGDIQVKELRSMLM 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,871,633
Number of Sequences: 59808
Number of extensions: 516585
Number of successful extensions: 1670
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1667
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)