Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00089
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         26   0.32 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    26   0.32 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    26   0.32 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.7  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   3.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   3.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.0  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 2   GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKR 121
           G+V       ++R  +L+K LP   E  F    FG D++R
Sbjct: 11  GIVCQGTTGNILRGESLNKSLPILHEWKFFDYDFGSDERR 50


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 2   GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKR 121
           G+V       ++R  +L+K LP   E  F    FG D++R
Sbjct: 11  GIVCQGTTGNILRGESLNKSLPILHEWKFFDYDFGSDERR 50


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 2   GLVAFDEFAEVMRKTALHKKLPFNMESTFVRLYFGKDKKR 121
           G+V       ++R  +L+K LP   E  F    FG D++R
Sbjct: 11  GIVCQGTTGNILRGESLNKSLPILHEWKFFDYDFGSDERR 50


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 213 VPSLSHFLNASTPYSSW 163
           VPS+ H    +T +SSW
Sbjct: 160 VPSVKHVAKCATDFSSW 176


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 465 PDDESNHAPRSGHIVNLCDILHHTNGRIVYNDLNSITPEQ 584
           P D  +HAP+      + D   H+ G  + N +N    E+
Sbjct: 277 PGDHGDHAPKQTVRFKVHDPKAHSKGGTLENTINGRADEE 316


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 3   DLLLLTNSPRLCEKRP 50
           DL+ L  SP  CEK P
Sbjct: 76  DLVYLEPSPPFCEKNP 91


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 3   DLLLLTNSPRLCEKRP 50
           DL+ L  SP  CEK P
Sbjct: 77  DLVYLEPSPPFCEKNP 92


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 313 FPQGERKISFPYY-MAFNSLLNNMEL 387
           FPQ  R  S PYY   + +++N +E+
Sbjct: 309 FPQRNRFSSLPYYKYKYLNVINALEM 334


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 313 FPQGERKISFPYY-MAFNSLLNNMEL 387
           FPQ  R  S PYY   + +++N +E+
Sbjct: 309 FPQRNRFSSLPYYKYKYLNVINALEM 334


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 177 PYSSWKSCKN*LNSG*VTSRFLSLPKYRRTNVL 79
           PY  W   K    SG V++  +++ +Y R  VL
Sbjct: 111 PYPDWSFAKYEDCSGIVSAHKIAIDEYERLWVL 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,559
Number of Sequences: 438
Number of extensions: 4290
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)