Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00088
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    46   4e-07
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    24   1.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.4  
AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esteras...    23   3.3  
AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esteras...    23   3.3  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.8  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    21   7.7  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    21   7.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 45.6 bits (103), Expect = 4e-07
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
 Frame = +1

Query: 532 KTGSGKTLAYILPAIVHI--NNQPPIRRGD--GPIALVLAPTRELAQQIQQVAADFGHTS 699
           +TGSGKT A++LP I ++  +  PP    +   P+ ++++PTRELA QI      F + S
Sbjct: 203 QTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNS 262

Query: 700 YVRNTCVF 723
            V+   ++
Sbjct: 263 TVKVAVIY 270



 Score = 38.7 bits (86), Expect = 5e-05
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 360 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +S R
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGR 196


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 15  VDPASERIHSLNKHLQLNPKN 77
           VDP SER+    + L++NP N
Sbjct: 511 VDPDSERMAFWQRILKINPNN 531


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 233 GRTCDAQMGFCFTPTFQQKLL*STSYSSQKIT 328
           GR C++++ FC T   Q   + +T ++  K T
Sbjct: 332 GRHCESKVNFCATSPCQNGGVCTTIHAGHKCT 363



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 595 VGYLCAQWLARCRPTFCRN 539
           +GY+C   +  CRP  C N
Sbjct: 253 LGYICEINVDDCRPGACHN 271


>AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 15  VDPASERIHSLNKHLQLNPKN 77
           VDP S+R+    + L++NP N
Sbjct: 511 VDPDSDRMAFWQRILKINPNN 531


>AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 15  VDPASERIHSLNKHLQLNPKN 77
           VDP S+R+    + L++NP N
Sbjct: 511 VDPDSDRMAFWQRILKINPNN 531


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 164 GLATVAIDLEDLEALVGKKNSLEGRTCDA 250
           G+   +I+ +DL A  G KN+L     DA
Sbjct: 345 GVMIWSIETDDLHATCGTKNALLHAVNDA 373


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/53 (18%), Positives = 23/53 (43%)
 Frame = -3

Query: 210 TKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPITRHDYFSDLVEDV 52
           T+  R+ +++++  +    I        + TT++ A       DYF   ++ V
Sbjct: 93  TQCERAKRTLSSATQASIEIDSLFDGIDYSTTITRARFEDINMDYFKKCIDPV 145


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/53 (18%), Positives = 23/53 (43%)
 Frame = -3

Query: 210 TKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPITRHDYFSDLVEDV 52
           T+  R+ +++++  +    I        + TT++ A       DYF   ++ V
Sbjct: 93  TQCERAKRTLSSATQASIEIDSLFDGIDYSTTITRARFEDINMDYFKKCIDPV 145


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,694
Number of Sequences: 336
Number of extensions: 3912
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)