Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00088
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 99 6e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 69 9e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 62 1e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 49 6e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 48 2e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 4e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 45 1e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 44 2e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 44 3e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 43 5e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 41 2e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 41 2e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 40 4e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 40 5e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 40 5e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 39 6e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 39 8e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 38 0.002
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 38 0.002
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.024
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 33 0.055
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 32 0.096
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.096
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.096
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.89
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.8
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 4.8
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.8
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 26 6.3
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 99.1 bits (236), Expect = 6e-22
Identities = 44/87 (50%), Positives = 57/87 (65%)
Frame = +3
Query: 255 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYV 434
W + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133
Query: 435 QQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ VK +G++ PTPIQ Q WP+AMS R
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGR 160
Score = 95.5 bits (227), Expect = 7e-21
Identities = 45/63 (71%), Positives = 50/63 (79%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 714
TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +RNT
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT 227
Query: 715 CVF 723
CV+
Sbjct: 228 CVY 230
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 68.5 bits (160), Expect = 9e-13
Identities = 30/64 (46%), Positives = 43/64 (67%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
KTGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRA 522
Query: 712 TCVF 723
C +
Sbjct: 523 CCAY 526
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 440
++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSER 515
+ ++GY++PT IQAQ P S R
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 61.7 bits (143), Expect = 1e-10
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Frame = +1
Query: 502 LCRKEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 669
L RK+ +TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 284 LQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 41.1 bits (92), Expect = 2e-04
Identities = 15/56 (26%), Positives = 33/56 (58%)
Frame = +3
Query: 348 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 49.2 bits (112), Expect = 6e-07
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPI--RRGDGPIALVLAPTRELAQQIQQVA 678
+TGSGKTLAY+LP + + P R G A+++APTREL QQI VA
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 511 KEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 675
K+ + +TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = +3
Query: 375 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 506
G+ + + F + N +Q+ + +++PT +Q++ P+A+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLAL 49
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = +1
Query: 502 LCRKEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 681
L K+ TGSGKTLAY+LP + + G G AL++APTRELA QI V
Sbjct: 36 LKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTK 93
Query: 682 D 684
+
Sbjct: 94 E 94
Score = 29.5 bits (63), Expect = 0.51
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
F+ N +++ V G+K+ TP+QA P+ + +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 45.2 bits (102), Expect = 1e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +R+
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRS 170
Query: 712 TCV 720
+
Sbjct: 171 VAI 173
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 44.0 bits (99), Expect = 2e-05
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 708
+TGSGKT A+ LP I + NN P A+VLAPTRELA QI + G + VR
Sbjct: 91 QTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVR 144
Query: 709 NTCV 720
+ +
Sbjct: 145 SVVI 148
Score = 32.3 bits (70), Expect = 0.073
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
F+E D + + + +G+K PTPIQ + P+ +++R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/53 (49%), Positives = 30/53 (56%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 690
KTGSGKT A+ LP I + P G AL+L PTRELA QI + A G
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 42.7 bits (96), Expect = 5e-05
Identities = 25/53 (47%), Positives = 33/53 (62%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 690
KTGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 84 KTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +1
Query: 532 KTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 684
KTGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
+ KTG+GKTLA++L A + P +++L+PTRELA QI + A + + +
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGI 141
Query: 706 R 708
R
Sbjct: 142 R 142
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 678
TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 510 ER 515
R
Sbjct: 202 GR 203
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 663
+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 210 ETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 39.5 bits (88), Expect = 5e-04
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +1
Query: 502 LCRKEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 678
L K+ TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 294 LLGKDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 39.5 bits (88), Expect = 5e-04
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 672
+ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
++++G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G + V
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 706 R 708
+
Sbjct: 214 K 214
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 690
R K G+GKT A+++P++ ++ + + L+L PTRELA Q QV G
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA 527
FE+ + G+ G++ P+PIQ + PIA+S R LA
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILA 86
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 705
+ ++G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G V
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 706 R-NTCV 720
+ C+
Sbjct: 117 ECHACI 122
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Frame = +1
Query: 532 KTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQ 672
+TGSGKT ++ P + + + P P+ + G P L+LAPTREL QI +
Sbjct: 214 QTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
Query: 673 VAADFGHTSYVRNTCVF 723
+ F + S+VR V+
Sbjct: 274 ESRKFCYRSWVRPCAVY 290
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI S R
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.024
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 666
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.7 bits (71), Expect = 0.055
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 702
+ ++G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H +
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 703 VRNTCV 720
+ C+
Sbjct: 119 QCHACI 124
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 488
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.9 bits (69), Expect = 0.096
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADFGHTSY 702
+ K+G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F
Sbjct: 94 QAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 703 VRNTCVF 723
T VF
Sbjct: 148 DVRTAVF 154
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.096
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 666
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.096
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 666
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.89
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -3
Query: 261 NPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--T 88
+P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 142 SPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVET 200
Query: 87 RHDYFSDLVEDVYLNYGFFLTQG 19
H+Y+++LV+ ++ F +QG
Sbjct: 201 EHEYYTELVKVKEASWPLFNSQG 223
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 467 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 342
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 327 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 458
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = +3
Query: 333 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSE 512
++E+Y + TVS V V + N + VQ + KE +A G I S+
Sbjct: 132 KIEKYTKETRPTVSEVRVSTKDKKEYSMNTSNLVQSNPPKVHDKENAFAEATGTSILSSK 191
Query: 513 RI*LAYQNGFRQNVGLHLA 569
+ + F +N HL+
Sbjct: 192 AVQTLLVSDFTENEPKHLS 210
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 327 PYEVEEYRNKHEVTVS 374
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 551 VLPEPVLVRQLNSFRHSYRPALSLNGRRF 465
VLP P+LV + + S P +S N +RF
Sbjct: 226 VLPGPLLVTSMLEYFRSVYPQMSKNMKRF 254
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 660
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 456 PLSLHLVAHNQENL--LLQSIE 397
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,033
Number of Sequences: 5004
Number of extensions: 65320
Number of successful extensions: 239
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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