Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00088
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 76 3e-14
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 60 2e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 56 2e-08
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 56 4e-08
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 48 1e-05
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 45 5e-05
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 45 5e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 41 0.001
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 40 0.002
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 40 0.002
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 40 0.003
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 39 0.004
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 36 0.033
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 35 0.058
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 34 0.10
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 34 0.13
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 33 0.24
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 31 0.72
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.7
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 30 1.7
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.8
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 6.7
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.7
SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08) 28 8.9
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/55 (60%), Positives = 43/55 (78%)
Frame = +1
Query: 559 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 723
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA G +R+TC++
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIY 167
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +3
Query: 321 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 488
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 74.1 bits (174), Expect = 1e-13
Identities = 35/64 (54%), Positives = 43/64 (67%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
KTGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL QQI A FG +
Sbjct: 562 KTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHV 621
Query: 712 TCVF 723
VF
Sbjct: 622 VAVF 625
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/89 (35%), Positives = 48/89 (53%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 428
P + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ ++ + Y +PT IQ Q PIA+S R
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGR 555
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQVAADFGHTS 699
+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++ FG
Sbjct: 146 ETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPL 205
Query: 700 YVRNTCV 720
+R V
Sbjct: 206 GIRTVSV 212
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +3
Query: 345 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + R
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 261 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQ 437
+V QPF K+FY P + K +P E +E+R E + V G P++ + + +
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117
Query: 438 QGVKTMGYKEPTPIQAQGWPIAMSER 515
+K Y++PTPIQAQ P+ MS R
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGR 143
Score = 36.7 bits (81), Expect = 0.019
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +1
Query: 547 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 723
K +Y P + P I G IA+V+ PTRELA QI + F + +R CV+
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVY 179
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 666
+TGSGKTLAY LP + + + P GD P+AL+L PTREL QQ+
Sbjct: 117 ETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +3
Query: 279 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 458
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 459 YKEPTPIQAQGWPIAMSER 515
++ PTPIQ Q MS R
Sbjct: 92 FQVPTPIQMQSLSCVMSGR 110
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 473
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 474 PIQAQGWPIAMSER 515
PIQ Q P+ +S R
Sbjct: 221 PIQMQVLPVLLSGR 234
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 696
+TGSGKT AY+LP + + Q P+AL +APTRELA+QI A F HT
Sbjct: 524 QTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHT 579
Score = 35.5 bits (78), Expect = 0.044
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 369 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
VSG I F E F + + + GY+ PTP+Q PI M+ R
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 333 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 500
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 559 YILPAIVHINNQPPIRRG---DGPIALVLAPTRELAQQI 666
Y P + + P + G G A+V++PTRELAQQI
Sbjct: 183 YTTPTPIQMQATPLMAHGPKKSGFRAVVVSPTRELAQQI 221
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQI 666
+ +TG+GKTL++ LP + + + + +RG P LV+APTRELA+Q+
Sbjct: 116 QARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQV 163
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVAADFGHTSY 702
+ ++G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V G +
Sbjct: 128 QAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMH 187
Query: 703 VR-NTCV 720
V+ + C+
Sbjct: 188 VKCHACI 194
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/54 (48%), Positives = 34/54 (62%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 693
KTGSGKTLA+++P I + Q DG ALV++PTRELA Q +V G+
Sbjct: 95 KTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKIGN 147
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 699
+TGSGKT A++LP + + N P A+ +APTRELA QI A F H +
Sbjct: 756 QTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHGT 815
Query: 700 YVR 708
+R
Sbjct: 816 MLR 818
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++ R
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/51 (41%), Positives = 34/51 (66%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 684
KTGSGKTLA+++P +V + + + +G ++++PTREL+ Q VA D
Sbjct: 617 KTGSGKTLAFLVP-VVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVARD 666
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQIQQVAADFGHT 696
+TGSGKTLAY+ P +VH + R G P A ++ P RELA QI + A H
Sbjct: 423 QTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCHH 481
Query: 697 SYVRN 711
+ R+
Sbjct: 482 ARFRS 486
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +1
Query: 502 LCRKEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 681
L ++ R K G+GKT AY++P + + + ALVL PTRELA Q Q+
Sbjct: 82 LAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICI 136
Query: 682 DFG 690
+ G
Sbjct: 137 ELG 139
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +1
Query: 502 LCRKEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAA 681
L ++ R K G+GKT AY++P + + + ALVL PTRELA Q Q+
Sbjct: 82 LAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICI 136
Query: 682 DFG 690
+ G
Sbjct: 137 ELG 139
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 702
+ ++G+GKT + + + I+ Q +R P ALVL+PTRELA QIQ+V G + S
Sbjct: 40 QAQSGTGKTATFSISVLQAIDTQ--LRE---PQALVLSPTRELANQIQKVVLALGDYMSV 94
Query: 703 VRNTCV 720
+ C+
Sbjct: 95 QCHACI 100
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKT A+++P + G AL+L+PTRELA Q Q+ + G + +++
Sbjct: 326 RTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQKFIKELGRFTGLKS 382
Query: 712 TCV 720
+ +
Sbjct: 383 SVI 385
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++ R
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 666
KTGSGKT A+ LP + + + P G A+VL PTRELA QI
Sbjct: 52 KTGSGKTAAFALPILQKLCDDP-----YGIFAVVLTPTRELAFQI 91
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 35.9 bits (79), Expect = 0.033
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 690
+TGSGKT A+ LP + + + P AL+L PTRELA QI + G
Sbjct: 9 ETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALG 56
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 35.9 bits (79), Expect = 0.033
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 14/70 (20%)
Frame = +1
Query: 502 LCRKEFSWRTKTGSGKTLAYILPAIVHIN-------NQPPI-------RRGDGPIALVLA 639
L ++ +TGSGKTLA+ +P I HI Q P +G +AL++A
Sbjct: 166 LYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALIMA 225
Query: 640 PTRELAQQIQ 669
PTRELA Q++
Sbjct: 226 PTRELALQVK 235
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 35.1 bits (77), Expect = 0.058
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA-QQIQQVAADFGHTSY 702
+++TG+GK+L ++LP++ Q P RG G I ++ PTRELA Q + +V+ G S
Sbjct: 203 KSETGTGKSLVFLLPSV-----QDP-GRGYGTI--IVVPTRELASQMLYEVSRLLGDKSI 254
Query: 703 V 705
V
Sbjct: 255 V 255
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 702
++++G+GKT A++L + ++ P P + L+PT ELA+Q +VA G H +
Sbjct: 148 QSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGKHCPH 202
Query: 703 VR 708
++
Sbjct: 203 IK 204
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 354 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSE 512
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ +++
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLAD 140
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 619 PIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 720
P ALVL+PTRELA QIQ+V G + S + C+
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACI 38
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 663
TG+GKT A++LP + + +P + LV+ PTRELA Q
Sbjct: 56 TGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELAIQ 96
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 396 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
I FE+ + + + V GYK+PTP+Q PI +R
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKR 913
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 31.5 bits (68), Expect = 0.72
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +1
Query: 475 PFKLKA---GR*LCRKEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 645
P +LKA GR C + + K+G+GKT + + A+ ++ I + ++L PT
Sbjct: 38 PIQLKAIPLGR--CGLDLIAQAKSGTGKTCVFSVIALENV-----ITESNCIQIIILTPT 90
Query: 646 RELAQQIQQVAADFG 690
RE+A Q++ V G
Sbjct: 91 REIAVQVKDVICAIG 105
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 381 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 494
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 327 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 458
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 538 GSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQIQQVAAD 684
GSGK LAY+LP I I + +GP+ L+L + ++ V D
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCED 285
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 211 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 101
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 339 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 431
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 277 GWSETESHLGVACS--ALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFH 107
GW T + S AL+RI + ++ C +YRR CC L +W H +
Sbjct: 181 GWRVTLRVIAATTSQQALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTN 239
Query: 106 GYYSN 92
Y+S+
Sbjct: 240 TYWSS 244
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +2
Query: 92 IGIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRTCDAQMGFCFT 271
+ +IAV + P++ EA I GL V I ++D EAL K NS+ +C + C T
Sbjct: 1258 VDVIAVG-IGPDVNEAELLEIAEGGLDHV-IRVDDYEALATKLNSILALSCPSGQETCTT 1315
>SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)
Length = 816
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNK-HEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTP 476
P P V + S Y +Y H S ++ + ++ P Y+QQ ++ +G
Sbjct: 341 PPPLVNQISQYNGSQYNQSLHYSLPSTFQISPVTPSLQPSSVPFYLQQDLEALGRISQPR 400
Query: 477 IQAQGWPIAMSERI 518
+ Q P+A +++
Sbjct: 401 VSPQSRPLASGQQV 414
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,525,865
Number of Sequences: 59808
Number of extensions: 480911
Number of successful extensions: 1282
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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