Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00088
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       49   4e-08
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 49.2 bits (112), Expect = 4e-08
 Identities = 23/52 (44%), Positives = 30/52 (57%)
 Frame = +3

Query: 360 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
           +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+ R
Sbjct: 183 QVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGR 234



 Score = 29.9 bits (64), Expect = 0.026
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 532 KTGSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 699
           +TGSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F   S
Sbjct: 241 QTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300

Query: 700 YVRNTCVF 723
            ++    +
Sbjct: 301 ILKTVVAY 308


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -3

Query: 261 NPIWASHVLPSREFFFP 211
           +P+W  H+   R   FP
Sbjct: 633 SPVWGRHIYDGRAMGFP 649


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -3

Query: 261 NPIWASHVLPSREFFFP 211
           +P+W  H+   R   FP
Sbjct: 633 SPVWGRHIYDGRAMGFP 649


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 318 KRSPYEVEEYRNKHEVTV 371
           K  P++V+++R+K  VT+
Sbjct: 64  KNYPFDVDQWRDKTFVTI 81


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -2

Query: 166 TETNYRRICCLLQIWNHRFHGYYSN 92
           T  N RR    ++ W H F   Y N
Sbjct: 416 TVENNRRNPWFVEFWEHHFQCRYPN 440



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 240 HATPRWDSVSLQPFNKNF 293
           H   R+ + S+ P+NKN+
Sbjct: 433 HFQCRYPNASVTPYNKNY 450


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,002
Number of Sequences: 438
Number of extensions: 4608
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)