Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00088
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 97 1e-20
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 88 6e-18
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 88 6e-18
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 74 8e-14
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 73 1e-13
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 71 6e-13
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 68 6e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 68 6e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 68 6e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 64 7e-11
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 62 3e-10
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 60 1e-09
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 56 3e-08
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 1e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 5e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 2e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 5e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 48 5e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 48 6e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 47 1e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 47 1e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 47 1e-05
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 46 2e-05
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 46 2e-05
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 46 3e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 45 6e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 45 6e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 45 6e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 45 6e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 44 8e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 43 2e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 43 2e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 43 2e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 42 3e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 42 4e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 4e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 42 6e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 40 0.001
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 40 0.001
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 40 0.001
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 40 0.002
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 39 0.003
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 39 0.003
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 38 0.007
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 37 0.012
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 36 0.021
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 36 0.027
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 36 0.027
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 36 0.036
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 35 0.063
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 34 0.083
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 34 0.11
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 33 0.15
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 33 0.19
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.25
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 32 0.45
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 31 1.0
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 31 1.0
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 31 1.0
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 31 1.0
At2g25460.1 68415.m03049 expressed protein 30 1.4
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 29 4.1
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 29 4.1
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 29 4.1
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 29 4.1
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.5
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.5
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.5
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 28 7.2
At1g53470.1 68414.m06061 mechanosensitive ion channel domain-con... 28 7.2
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 28 7.2
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 9.6
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 27 9.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 97.1 bits (231), Expect = 1e-20
Identities = 43/86 (50%), Positives = 54/86 (62%)
Frame = +3
Query: 258 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 437
D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 438 QGVKTMGYKEPTPIQAQGWPIAMSER 515
+ VK G+ EPTPIQ+QGWP+AM R
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGR 137
Score = 95.9 bits (228), Expect = 2e-20
Identities = 42/64 (65%), Positives = 53/64 (82%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKT 203
Query: 712 TCVF 723
TC++
Sbjct: 204 TCIY 207
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 87.8 bits (208), Expect = 6e-18
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 87.8 bits (208), Expect = 6e-18
Identities = 39/64 (60%), Positives = 52/64 (81%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 712 TCVF 723
TC++
Sbjct: 270 TCIY 273
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 87.8 bits (208), Expect = 6e-18
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 87.8 bits (208), Expect = 6e-18
Identities = 39/64 (60%), Positives = 52/64 (81%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 712 TCVF 723
TC++
Sbjct: 270 TCIY 273
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 74.1 bits (174), Expect = 8e-14
Identities = 34/64 (53%), Positives = 42/64 (65%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
KTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRC 633
Query: 712 TCVF 723
V+
Sbjct: 634 VPVY 637
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/84 (33%), Positives = 45/84 (53%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 443
+ +PF KNFY + + + EV YR + E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
+K + Y++P PIQ Q PI MS R
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 73.3 bits (172), Expect = 1e-13
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 666
KTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQG 443
+ +PF KNFY + + + V YR + E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
+K + Y++P PIQAQ PI MS R
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 71.3 bits (167), Expect = 6e-13
Identities = 29/85 (34%), Positives = 48/85 (56%)
Frame = +3
Query: 261 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 440
S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSER 515
+K Y++PT IQ Q PI +S R
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGR 266
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
KTGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRV 332
Query: 712 TCVF 723
+ V+
Sbjct: 333 SAVY 336
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/72 (44%), Positives = 41/72 (56%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 712 TCVF 723
TC++
Sbjct: 262 TCLY 265
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/72 (44%), Positives = 41/72 (56%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 712 TCVF 723
TC++
Sbjct: 262 TCLY 265
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/72 (44%), Positives = 41/72 (56%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 479
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSER 515
QAQ WPIAM R
Sbjct: 185 QAQSWPIAMQGR 196
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 712 TCVF 723
TC++
Sbjct: 262 TCLY 265
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 64.5 bits (150), Expect = 7e-11
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
KTGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISC 538
Query: 712 TCVF 723
TC++
Sbjct: 539 TCLY 542
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +3
Query: 282 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 449
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 450 TMGYKEPTPIQAQGWPIAMSER 515
+ G+ PTPIQAQ WPIA+ R
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSR 473
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 702
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLG 417
Query: 703 VRNTCV 720
R T +
Sbjct: 418 FRVTSI 423
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/93 (21%), Positives = 46/93 (49%)
Frame = +3
Query: 237 EHATPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 416
E A +DS ++ ++++ D + + + +R ++ G + P++ +EE+
Sbjct: 262 EEAADTYDSFDMR-VDRHWSDKRLEEMTERDWRI--FREDFNISYKGSRIPRPMRSWEES 318
Query: 417 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + V+ GYK+P+PIQ P+ + +R
Sbjct: 319 KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR 351
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/64 (48%), Positives = 40/64 (62%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 711
KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISC 332
Query: 712 TCVF 723
C++
Sbjct: 333 ACLY 336
Score = 35.9 bits (79), Expect = 0.027
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 444 VKTMGYKEPTPIQAQGWPIAMSER 515
V + G+ P+PIQAQ WPIAM R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNR 267
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 339 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 428
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTS 699
KTGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC 218
Query: 700 YVRNTCVF 723
+++ CV+
Sbjct: 219 GLKSICVY 226
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 333 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 506
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 507 SER 515
R
Sbjct: 150 DGR 152
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 687
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q V F
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/75 (33%), Positives = 42/75 (56%)
Frame = +3
Query: 291 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 471 TPIQAQGWPIAMSER 515
TPIQ QG P+ +S R
Sbjct: 121 TPIQVQGLPVVLSGR 135
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 687
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 473
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 474 PIQAQGWPIAMSER 515
PIQ QG P+ ++ R
Sbjct: 171 PIQVQGLPVILAGR 184
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGH 693
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLH 129
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.4 bits (110), Expect = 5e-06
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADF 687
R +TG GKTLA++LP + + N P + G P LVL PTRELA +QVAADF
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA---KQVAADF 194
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 672
R +TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 48.0 bits (109), Expect = 6e-06
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +1
Query: 508 RKEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQ 672
RK + TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +
Sbjct: 149 RKSVVLGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYR 207
Query: 673 VAADFGHTSYVRNTCV 720
VA H + R+ V
Sbjct: 208 VAKSISHHARFRSILV 223
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +1
Query: 511 KEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 663
K+ + KTG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 511 KEFSWRTKTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 666
K+ R KTGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 696
+TGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ 263
Query: 697 SYVR 708
+ V+
Sbjct: 264 TGVK 267
Score = 34.3 bits (75), Expect = 0.083
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Frame = +3
Query: 255 WD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFP 425
WD + PF + +P P ++ + + + SG V P+ F E +
Sbjct: 108 WDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLG 167
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + ++ Y +PTP+Q PI + R
Sbjct: 168 EALNLNIRRCKYVKPTPVQRHAIPILLEGR 197
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 690
R KTG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE-- 202
Query: 691 HTSYVRNTCVF 723
Y+ CV+
Sbjct: 203 SAPYLSTVCVY 213
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQ 672
R +TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 696
+TGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250
Query: 697 SYVR 708
+ V+
Sbjct: 251 TGVK 254
Score = 32.7 bits (71), Expect = 0.25
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = +3
Query: 255 WD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFP 425
WD PF N DP + + E Y + + SG V P+ F E +
Sbjct: 96 WDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLG 154
Query: 426 DYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
+ + ++ Y +PTP+Q PI + R
Sbjct: 155 EALNLNIQRCKYVKPTPVQRNAIPILAAGR 184
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 511 KEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 663
K+ + KTG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 92 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 511 KEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 663
K+ + KTG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 502 LCRKEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQI 666
L ++ +TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 186 LAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
Query: 667 QQVAADFGHTSYVR 708
A F + + V+
Sbjct: 246 HDEAKKFSYQTGVK 259
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 502 LCRKEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQI 666
L ++ +TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 186 LAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
Query: 667 QQVAADFGHTSYVR 708
A F + + V+
Sbjct: 246 HDEAKKFSYQTGVK 259
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 696
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVST 116
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +1
Query: 502 LCRKEFSWRTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 663
LC ++ +TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 690
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG 210
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 324 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 497
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 498 IAMSERI*LA 527
A++ + LA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 690
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLG 73
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 511 KEFSWRTKTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 684
K+ +TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 127 KDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEE 183
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 678
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 708
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLR 128
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE N V +K GYK PTPIQ + P+ +S
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILS 64
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 666
+ KTG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 348 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +S R
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 663
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 684
+TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA +
Sbjct: 199 RTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKE 248
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 273 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 452
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 453 MGYKEPTPIQAQGW-PIAMSERI*LAYQNG 539
MG+ T IQA+ P+ M E + A + G
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTG 201
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +1
Query: 502 LCR-KEFSWRTKTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQ 669
LC K+ + TGSGKTLA+++P + + PP + + ++++PTREL+ QI
Sbjct: 50 LCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIY 107
Query: 670 QVAADFGHT 696
VA F T
Sbjct: 108 NVAQPFVST 116
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 666
+ KTG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 366 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
TV GV H F E N + + +T+GYK+PTPIQA P+A++ R
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 675
TGSGKT A+ LP + + +P +R L+L PTRELA QI +
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSM 257
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 690
R K G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA 527
FE+ + G+ G++ P+PIQ + PIA++ R LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 690
R K G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELG 223
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LA 527
FE+ + G+ G++ P+PIQ + PIA++ R LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 675
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 672
+TGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ +
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAE 144
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQI 666
++GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 684
R K G+GKT A+ +P + I+ + + + A++L PTRELA Q QV +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKE 244
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE+ + +G+ G+++P+PIQ + PIA++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALT 190
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 684
R K G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE+ + +G+ G+++P+PIQ + PIA++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALT 160
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 684
R K G+GKT A+ +P + I+ + + A++L PTRELA Q QV +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKE 214
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 509
FE+ + +G+ G+++P+PIQ + PIA++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALT 160
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.5 bits (78), Expect = 0.036
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 678
+TGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 34.7 bits (76), Expect = 0.063
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 625 ALVLAPTRELAQQIQQVAADFGHTSYVR-NTCV 720
ALVLAPTRELAQQI++V G V+ + CV
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACV 142
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.3 bits (75), Expect = 0.083
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 538 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 690
GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 141 GSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 625 ALVLAPTRELAQQIQQVAADFGHTSYVR-NTCV 720
ALVLAPTRELAQQI++V G V+ + CV
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 142
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1
Query: 625 ALVLAPTRELAQQIQQVAADFG 690
ALVLAPTRELAQQI++V G
Sbjct: 112 ALVLAPTRELAQQIEKVMRALG 133
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Frame = +1
Query: 532 KTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQ 672
+TGSGKT A+ +P + + +++P R P A VL+PTRELA QI +
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +1
Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 666
TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 31.9 bits (69), Expect = 0.45
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = -3
Query: 264 QNPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPIT 88
QN +W VL + F F K R ++S A R ++ VA + T+ ++ +
Sbjct: 352 QNCLWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASS 411
Query: 87 RH--DYFSDLVEDVYLNYGFFLTQGPP 13
H YF + E ++ Y GPP
Sbjct: 412 FHMSTYFDRIQESLFTQYVIETLSGPP 438
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 666
+ K+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 666
+ K+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 RTKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 666
+ K+G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 393 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSERI*LAYQNG 539
PI+ F++ D V +GV GYK+P+ IQ + PI + Q+G
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSG 69
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 628 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 720
LVL+P+RELA Q ++ G HT+ + C+
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACI 125
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 214 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 98
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 625 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 720
AL+L+PTRELA Q ++ G H + + C+
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 255 SPVRDEYAPVIFSQ 268
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 665 ICCANSLVGAKTKAIGPSPLRI 600
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 285 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 440
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 285 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 440
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Frame = +1
Query: 511 KEFSWRTKTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPT 645
K+ +TGSGKTLA+ LP + + + DG + AL++ PT
Sbjct: 229 KDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPT 288
Query: 646 RELAQQIQQ 672
RELA Q+ +
Sbjct: 289 RELALQVTE 297
>At1g53470.1 68414.m06061 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 881
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = -3
Query: 264 QNPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPIT 88
QN +W VL + F F K R +S + +I VA + T+ ++ +
Sbjct: 342 QNCLWLGLVLIAWHFLFDKKVEREMRSTVLKYVTKVLICLLVAVIIWLIKTLLVKVLASS 401
Query: 87 RH--DYFSDLVEDVYLNYGFFLTQGPP 13
H YF + E ++ Y GPP
Sbjct: 402 FHMSTYFDRIQESLFTQYVIETLSGPP 428
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 409 KKQIFLIMCNKV*RQWVTKNRRPFKLKAGR*LCRKEFSWRTKTGSGKTLAYILPA 573
K ++F C K Q+ + FK++ G K + + GSGKT PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 95 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 241
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +3
Query: 234 AEHATPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQY 404
A+ A W++ +QP PHPT + +Y N +++ + + +NP+ +
Sbjct: 260 AQVANVSWNNPIMQPTGFYCAPPHPTPPPTNNLGYIQYMNGFDLSGTNISGYNPLAW 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,634,753
Number of Sequences: 28952
Number of extensions: 336695
Number of successful extensions: 1087
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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