Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00086
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    70   2e-14
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   2.5  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    23   3.3  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    23   3.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 69.7 bits (163), Expect = 2e-14
 Identities = 30/81 (37%), Positives = 50/81 (61%)
 Frame = -3

Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
           F++     D+L   +  ++   +++HGD  Q ERE  +  F+TG  +VL+ T + ARG+D
Sbjct: 415 FVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATGVAARGLD 474

Query: 348 VQQVSCVINYDLPSNRENYIH 286
           ++ V  VINYDLP + + Y+H
Sbjct: 475 IKDVQHVINYDLPKSIDEYVH 495



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 305 TVKIIFTGLDEVDVLVVGN 249
           T  + F  LDE++V V GN
Sbjct: 133 TTGVNFMKLDEIEVKVTGN 151


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 330 RRKLAVHQYHVPINQW*SRHEKSQYET 410
           RRK A  +    +  W + H+K+ Y T
Sbjct: 87  RRKNATRESTATLKAWLNEHKKNPYPT 113


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 479 CVTLLYLLCME 447
           C+TLLY++C E
Sbjct: 322 CMTLLYIICNE 332


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 479 CVTLLYLLCME 447
           C+TLLY++C E
Sbjct: 322 CMTLLYIICNE 332


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,284
Number of Sequences: 336
Number of extensions: 3982
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)