Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00086
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 132 6e-32
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 118 8e-28
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 73 4e-14
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 73 4e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 69 7e-13
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 2e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 66 5e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 65 1e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 64 3e-11
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 61 2e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 60 2e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 60 3e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 3e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 58 2e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 56 4e-09
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 55 1e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 53 5e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 53 5e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 47 2e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 47 3e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 46 5e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 44 2e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 44 2e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 40 3e-04
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 40 3e-04
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 39 8e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 34 0.024
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 34 0.024
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 33 0.041
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.041
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 27 2.1
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 2.7
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ... 25 8.3
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 8.3
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 132 bits (318), Expect = 6e-32
Identities = 59/75 (78%), Positives = 68/75 (90%)
Frame = -3
Query: 510 QVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSC 331
+VDWLTE + RDFTVS+MHGDMDQ +R+ +M +FRTGSSR+LITTDLLARGIDVQQVS
Sbjct: 270 KVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSL 329
Query: 330 VINYDLPSNRENYIH 286
VINYDLP+NRENYIH
Sbjct: 330 VINYDLPANRENYIH 344
Score = 126 bits (305), Expect = 2e-30
Identities = 55/72 (76%), Positives = 67/72 (93%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SATMP DVLEV+ FMRDP+RILV+K+ELTLEGIKQFY+A+E EEWKL+TLCDLY+T+++
Sbjct: 199 SATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTV 258
Query: 542 AQAVIFCNTRRR 507
QAVIFCNTRR+
Sbjct: 259 TQAVIFCNTRRK 270
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G++INFVT D R +++IE FY+T I EMP ++A+LI
Sbjct: 356 GVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 118 bits (284), Expect = 8e-28
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F +VDWLTE M +FTV++MHG+M Q+ER+ IM+ FR G+SRVLI TD+ ARGID
Sbjct: 266 FCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGID 325
Query: 348 VQQVSCVINYDLPSNRENYIH 286
VQQVS VINYDLP+NRENYIH
Sbjct: 326 VQQVSLVINYDLPANRENYIH 346
Score = 113 bits (273), Expect = 2e-26
Identities = 49/72 (68%), Positives = 64/72 (88%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT+P DVLE++ F +PVRILV+++ELTLEG+KQ++IA+E EEWK +TLCDLYDTL+I
Sbjct: 201 SATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTI 260
Query: 542 AQAVIFCNTRRR 507
QAVIFCN+RR+
Sbjct: 261 TQAVIFCNSRRK 272
Score = 46.0 bits (104), Expect = 5e-06
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+AINFVT D R L+DIE +Y T I EMP ++ +++
Sbjct: 358 GVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 72.9 bits (171), Expect = 4e-14
Identities = 30/81 (37%), Positives = 54/81 (66%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ D LT+ + +F +++HGD QRERE + FR+G + +++ T + +RG+D
Sbjct: 436 FVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLD 495
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V+ VINYDLP++ ++Y+H
Sbjct: 496 IPNVTHVINYDLPTDIDDYVH 516
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 72.9 bits (171), Expect = 4e-14
Identities = 30/73 (41%), Positives = 48/73 (65%)
Frame = -3
Query: 504 DWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 325
D +T + + A+HGD Q ER+ ++ +FRTG S +++ TD+ +RGIDV+ ++ V
Sbjct: 383 DDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVF 442
Query: 324 NYDLPSNRENYIH 286
NYD P N E+Y+H
Sbjct: 443 NYDFPGNTEDYVH 455
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 68.9 bits (161), Expect = 7e-13
Identities = 28/81 (34%), Positives = 49/81 (60%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+ D L + R +T +++HG DQ +R+ + ++ G VLI T ++ARG+D
Sbjct: 674 FVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLD 733
Query: 348 VQQVSCVINYDLPSNRENYIH 286
V+ + V+NYD P++ E+Y+H
Sbjct: 734 VKSLQLVVNYDCPNHMEDYVH 754
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/73 (39%), Positives = 48/73 (65%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F + + + M TV+ + G+++ +R+ IM FR G+S+VL+TT+++ARGID
Sbjct: 358 FCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGID 417
Query: 348 VQQVSCVINYDLP 310
V QV+ V+NYD+P
Sbjct: 418 VSQVNLVVNYDMP 430
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/70 (38%), Positives = 42/70 (60%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT + V + + F + I ++ EEL++EGIKQ Y+ + EE K L +LY L+I
Sbjct: 293 SATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTI 352
Query: 542 AQAVIFCNTR 513
Q++IFC +
Sbjct: 353 GQSIIFCKKK 362
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 66.1 bits (154), Expect = 5e-12
Identities = 33/81 (40%), Positives = 46/81 (56%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+Q + L + + V +HG++ Q +RE + +FR G VLI TDLLARGID
Sbjct: 294 FVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGID 353
Query: 348 VQQVSCVINYDLPSNRENYIH 286
V VIN+D P + +YIH
Sbjct: 354 FHGVKMVINFDFPQSVHSYIH 374
Score = 29.1 bits (62), Expect = 0.67
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETL 570
SAT+P V E+++ DP+RI+V ++ + I Q + + + K+ L
Sbjct: 228 SATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVIL 278
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 64.9 bits (151), Expect = 1e-11
Identities = 27/81 (33%), Positives = 50/81 (61%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+ + + + L + V+ +H +M QRER + +FR ++++L+ TD+ +RG+D
Sbjct: 264 FVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLD 323
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V VIN+DLP + ++YIH
Sbjct: 324 IPSVQLVINFDLPRDPDDYIH 344
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/81 (37%), Positives = 44/81 (54%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F ++V+ L + + ++ H M Q R + FR G R L+ +DLL RGID
Sbjct: 287 FCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGID 346
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+Q V+ VIN+D P N E Y+H
Sbjct: 347 IQAVNVVINFDFPKNAETYLH 367
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT P V + P I + +ELTL G+ Q+Y ++ E K+ L L+ L I
Sbjct: 224 SATFPLIVKNFMDKHLNKPYEINLM-DELTLRGVTQYYAFVD-ESQKVHCLNTLFSKLQI 281
Query: 542 AQAVIFCNTRRR 507
Q++IFCN+ R
Sbjct: 282 NQSIIFCNSTNR 293
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI*GAYIFP 122
G+AI+F++ ADR L IE+ T I +P + + Y+FP
Sbjct: 379 GLAISFISWADRFNLYRIENELGTEIQPIPPSIDPSL---YVFP 419
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 60.9 bits (141), Expect = 2e-10
Identities = 26/81 (32%), Positives = 48/81 (59%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ S+ + L + +F +HG + Q ER + F+ R+ + TD+ RGID
Sbjct: 301 FVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGID 360
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+++V+ VINYD+P + ++Y+H
Sbjct: 361 IERVNIVINYDMPDSPDSYLH 381
Score = 49.2 bits (112), Expect = 6e-07
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLS 546
SAT+ +++ + + FM++P+ I V E +LTL G++Q Y+ +E E+ K + DL D+L
Sbjct: 236 SATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLE-EKAKNRKINDLLDSLE 294
Query: 545 IAQAVIFCNTRRR 507
Q VIF + R
Sbjct: 295 FNQVVIFVKSVSR 307
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 60.5 bits (140), Expect = 2e-10
Identities = 24/62 (38%), Positives = 40/62 (64%)
Frame = -3
Query: 471 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 292
F+ +HG + Q R + +F++G+ L+ TD+ ARG+D+ V VINYD+P++ + Y
Sbjct: 310 FSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAY 369
Query: 291 IH 286
IH
Sbjct: 370 IH 371
Score = 29.1 bits (62), Expect = 0.67
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SATM V ++ R + PVR+ V + T++ + Q Y+ + K L L + L+
Sbjct: 227 SATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKH-KDTYLVYLVNELAG 285
Query: 542 AQAVIFCNT 516
+IF T
Sbjct: 286 NSIIIFART 294
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 60.1 bits (139), Expect = 3e-10
Identities = 26/64 (40%), Positives = 38/64 (59%)
Frame = -3
Query: 477 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 298
R + V +HGDM Q R + F++G VL+ TD+ ARG+D+ +V VIN P E
Sbjct: 439 RKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIE 498
Query: 297 NYIH 286
+Y+H
Sbjct: 499 DYVH 502
Score = 30.7 bits (66), Expect = 0.22
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEEL 636
SAT P+ V ++ F++DPV+I + +EL
Sbjct: 352 SATWPESVRALAATFLKDPVKITIGSDEL 380
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 60.1 bits (139), Expect = 3e-10
Identities = 26/81 (32%), Positives = 49/81 (60%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+ V++++E + ++VS ++G +DQ R + FR G + +L+ TD+ +RGID
Sbjct: 352 FVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGID 411
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ ++ VINYD P + ++H
Sbjct: 412 IPLLANVINYDFPPQPKVFVH 432
Score = 35.1 bits (77), Expect = 0.010
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT+P +++ ++ ++DPV + + E ++ + +++ E + LC L D + +
Sbjct: 251 SATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKL 310
Query: 542 AQAVIFCNTRRRWIGSLN 489
+ N R R IG++N
Sbjct: 311 P---LKDNVRPREIGNVN 325
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 57.6 bits (133), Expect = 2e-09
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = -3
Query: 480 LRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNR 301
L + +HG + Q +R + FR G L+ TD+ +RGID++ + VINY+ P+
Sbjct: 526 LLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATH 585
Query: 300 ENYIH 286
E Y+H
Sbjct: 586 EVYLH 590
Score = 28.7 bits (61), Expect = 0.89
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAI 600
SATM D V ++ R + PVR+ V ++ T + + Q ++ +
Sbjct: 443 SATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRV 483
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/81 (28%), Positives = 45/81 (55%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+ ++ + + ++ + +HG Q +RE + Q R ++ +L+ TD+ RGID
Sbjct: 522 FVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGID 581
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ VS V+NY++ + E+Y H
Sbjct: 582 IPNVSLVLNYNMAKSIEDYTH 602
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/74 (35%), Positives = 45/74 (60%)
Frame = -3
Query: 507 VDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCV 328
++ + ES++ + F+ + + ER+ I+ +F TG +L+ +DL+ARGIDV V
Sbjct: 451 LELIHESLN-QSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNV 509
Query: 327 INYDLPSNRENYIH 286
INYD P + +Y+H
Sbjct: 510 INYDPPLSVRSYVH 523
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 52.8 bits (121), Expect = 5e-08
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+ + V ++ E ++ D V +HG Q+ R +F +L+ T++ ARG+D
Sbjct: 342 FMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLD 401
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V ++ YD P + +YIH
Sbjct: 402 IPAVDWIVQYDPPDDPRDYIH 422
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 52.8 bits (121), Expect = 5e-08
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = -3
Query: 456 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+H +DQ++R + +F+ VL+ TD+ ARGID+ V+ VI+Y +P + Y+H
Sbjct: 419 LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVH 475
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = -3
Query: 465 VSAMHGDMDQREREVIMRQFRTGS---SRVLITTDLLARGIDVQQVSCVINYDLPSNREN 295
V +HG + Q+ R + F + S +L+ TD+ ARG+D+ V V+ YD P + ++
Sbjct: 470 VYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDD 529
Query: 294 YIH 286
Y+H
Sbjct: 530 YLH 532
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = -3
Query: 528 FLQHPSQVDWLTESM--HLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 355
FL S VD++ + HL+ +H + +R I FR S +L TD++ARG
Sbjct: 298 FLPTISMVDFVGGVLENHLK-IPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARG 356
Query: 354 IDVQQVSCVINYDLPSNRENYIH 286
+D ++ V+ PSN ++YIH
Sbjct: 357 MDFPNITQVVQITGPSNTDDYIH 379
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 46.0 bits (104), Expect = 5e-06
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMH--GDMDQREREVIMRQFRTGSSRVLITTDLLARG 355
FL QV ++ E+ +S +H G Q R + +F + VL TD++ARG
Sbjct: 289 FLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARG 348
Query: 354 IDVQQVSCVINYDLPSNRENYIH 286
+D V VI D P + + YIH
Sbjct: 349 LDFPAVDWVIQLDAPEDVDTYIH 371
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 44.0 bits (99), Expect = 2e-05
Identities = 15/27 (55%), Positives = 24/27 (88%)
Frame = -3
Query: 366 LARGIDVQQVSCVINYDLPSNRENYIH 286
+ARG+D + V+CV+N+D+PSN ++YIH
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSYIH 412
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = -3
Query: 549 VYCTSCNFLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSR-VLITT 373
V+ +SC +++ + + +LT + F + A+HG Q R +F+ + + VL TT
Sbjct: 261 VFFSSCASVEYFNSL-FLTYKL---PFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTT 316
Query: 372 DLLARGIDVQQVSCVINYDLPSNRENYIH 286
D+ +RG+D+ V V+ D P + +++ H
Sbjct: 317 DIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFT----VSAMHGDMDQREREVIMRQFR--TGSSRVLITTDL 367
F + V+++ +H D V+ GD+ ER++ FR G +R++I T
Sbjct: 1421 FCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKA 1480
Query: 366 LARGIDVQQVSCVINYDLPSNRENYI 289
GI+ V V++Y LP++ +Y+
Sbjct: 1481 FGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFT----VSAMHGDMDQREREVIMRQFR--TGSSRVLITTDL 367
F + V+++ +H D V+ GD+ ER++ FR G +R++I T
Sbjct: 1421 FCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKA 1480
Query: 366 LARGIDVQQVSCVINYDLPSNRENYI 289
GI+ V V++Y LP++ +Y+
Sbjct: 1481 FGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = -3
Query: 453 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 292
H +++ ER+ I ++++GS ++++ T G+D V VI++ P + E Y
Sbjct: 774 HAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGY 827
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 33.9 bits (74), Expect = 0.024
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 459 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 325
A+ G+ + ERE +++ FR VL+ +L G D+ + C++
Sbjct: 294 ALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM 338
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 33.9 bits (74), Expect = 0.024
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -3
Query: 462 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 304
SA M+Q +++ + QFR G L+ T + G+D+ +I YD S+
Sbjct: 509 SAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSS 561
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 33.1 bits (72), Expect = 0.041
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 444 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYI 289
M R ++ + +F+TG VLI T + GIDV + VI +++ Y+
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 33.1 bits (72), Expect = 0.041
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 444 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 316
M Q+ + ++QF+ G LI T + G+D+ +V +I YD
Sbjct: 476 MSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYD 518
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -1
Query: 155 GQPHLRRLHFSDLYSVSCVLLRYL*EDLPTEPVKRT 48
G P L+ L F DL V L L +LPTEP K+T
Sbjct: 203 GDP-LKDLLFKDLRPVQTKELESLFAELPTEPPKQT 237
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 677 MRDPVRILVQKEELTLEGIKQFYIAIELEEW 585
+ DP R V+KE+LT G+ + A + + W
Sbjct: 65 LTDPARNFVEKEDLTALGVNVYNNADDWKNW 95
>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 314 CHPTVKIIFTGLDEVD 267
C+P V + F G DEVD
Sbjct: 85 CYPNVDVSFDGADEVD 100
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Frame = -3
Query: 669 SCTHTCTEGR----------AYPGRY*TILHCN*IRRMEAGNSV*PV*YTVYCTSCNFLQ 520
SC HTCT R Y + C+ R+ ++ T++C C ++
Sbjct: 73 SCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDCKQVR 132
Query: 519 HPSQ 508
HPS+
Sbjct: 133 HPSR 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,099
Number of Sequences: 5004
Number of extensions: 63409
Number of successful extensions: 198
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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