Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00086
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 3e-29
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 8e-27
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 70 2e-12
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 67 1e-11
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 67 1e-11
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 66 2e-11
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 66 4e-11
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 65 6e-11
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 65 6e-11
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 62 6e-10
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 61 8e-10
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 8e-10
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 59 3e-09
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 59 4e-09
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 55 7e-08
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 54 2e-07
SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11) 50 3e-06
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 46 8e-06
SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19) 43 2e-04
SB_23184| Best HMM Match : Helicase_C (HMM E-Value=7.8e-23) 42 5e-04
SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017) 42 5e-04
SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017) 42 5e-04
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 41 0.001
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 41 0.001
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 40 0.002
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) 40 0.002
SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18) 40 0.002
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 30 1.7
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094) 29 2.9
SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4) 29 3.8
SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_22696| Best HMM Match : 7tm_1 (HMM E-Value=2.9) 29 5.0
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 29 5.0
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 28 8.8
SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 125 bits (302), Expect = 3e-29
Identities = 57/75 (76%), Positives = 66/75 (88%)
Frame = -3
Query: 510 QVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSC 331
+VDWL M +D TVS+MHGDM Q+ER++IM++FR+GSSRVLITTDLLARGIDV QVS
Sbjct: 342 KVDWLAAKMTEKDHTVSSMHGDMSQKERDIIMKEFRSGSSRVLITTDLLARGIDVHQVSL 401
Query: 330 VINYDLPSNRENYIH 286
VINYDLPSNRENYIH
Sbjct: 402 VINYDLPSNRENYIH 416
Score = 116 bits (278), Expect = 3e-26
Identities = 53/78 (67%), Positives = 67/78 (85%), Gaps = 2/78 (2%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SATMP DVLEV+ FMRD VRILV++EE+TLEGIKQF++ +E E+WKL+TLCDLY+TL+I
Sbjct: 271 SATMPTDVLEVTNKFMRDVVRILVKREEVTLEGIKQFFVLVEKEDWKLDTLCDLYETLTI 330
Query: 542 AQAVIFCNTRRR--WIGS 495
QAVIF NTRR+ W+ +
Sbjct: 331 TQAVIFANTRRKVDWLAA 348
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 117 bits (282), Expect = 8e-27
Identities = 54/81 (66%), Positives = 64/81 (79%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F +VDWLTE M +FTV++MHGDM Q+ERE IM+ FR G SRVLI+TD+ ARG+D
Sbjct: 242 FCNTKRKVDWLTEKMREANFTVASMHGDMPQKEREAIMKDFRAGQSRVLISTDVWARGLD 301
Query: 348 VQQVSCVINYDLPSNRENYIH 286
VQQVS VINYDLP+NRE YIH
Sbjct: 302 VQQVSLVINYDLPNNRELYIH 322
Score = 117 bits (281), Expect = 1e-26
Identities = 49/72 (68%), Positives = 65/72 (90%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT+P ++LE++ FM DP+RILV+++ELTLEGIKQF++A+E EEWK +TLCDLYDTL+I
Sbjct: 177 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 236
Query: 542 AQAVIFCNTRRR 507
QAVIFCNT+R+
Sbjct: 237 TQAVIFCNTKRK 248
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+AINFV D R L+DIE +Y T I EMP +VA+LI
Sbjct: 334 GVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI 370
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/71 (42%), Positives = 49/71 (69%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT +DV++ + + +P+ I +++EE +L+ IKQ+Y+ + E K E LC++Y LSI
Sbjct: 285 SATYDEDVMKFAETVVPNPIIIRLRREEESLDNIKQYYVVCKNSEDKFEALCNMYGVLSI 344
Query: 542 AQAVIFCNTRR 510
Q V+FC+TRR
Sbjct: 345 GQCVVFCHTRR 355
Score = 65.3 bits (152), Expect = 5e-11
Identities = 28/68 (41%), Positives = 45/68 (66%)
Frame = -3
Query: 501 WLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVIN 322
WL E M V+ + G++ +R ++ +FR G ++LITT++ ARGIDV+QV+ VIN
Sbjct: 359 WLAEKMVKEGHAVALLSGEITIEQRIAVLERFRLGKEKLLITTNVSARGIDVEQVTLVIN 418
Query: 321 YDLPSNRE 298
YD+P + +
Sbjct: 419 YDMPMDMQ 426
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 69.3 bits (162), Expect = 3e-12
Identities = 32/81 (39%), Positives = 49/81 (60%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ D+L + F +++HGD Q+ERE + FR G VLI T++ ARG+D
Sbjct: 968 FVESKRSADFLAIFLSGEGFPTTSIHGDRLQQEREEALDDFRKGRCPVLIATNVAARGLD 1027
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V VIN+DLPS+ + Y+H
Sbjct: 1028 IDDVKHVINFDLPSDIDEYVH 1048
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ D L + + +++HGD QRERE +R FR G + +L+ T + ARG+D
Sbjct: 1106 FVETKKGADALEMFLAKDGYYCTSIHGDRSQREREEALRTFRCGDTPILVATAVAARGLD 1165
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V VIN+DLP++ E Y+H
Sbjct: 1166 IPNVKHVINFDLPTDIEEYVH 1186
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F + S VD + E + L+ A+HGD Q ER +R+F G+ VL+ TD+ ++G+D
Sbjct: 93 FAEKKSDVDDIHEYLLLKGVEAVAIHGDKSQEERVHAIREFHQGNKDVLVATDVASKGLD 152
Query: 348 VQQVSCVINYDLPSNRENYI 289
+ VIN+D+P + ENY+
Sbjct: 153 FPDIQHVINFDMPEDIENYV 172
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F + S VD + E + L+ A+HGD Q ER +R+F G+ VL+ TD+ ++G+D
Sbjct: 93 FAEKKSDVDDIHEYLLLKGVEAVAIHGDKSQEERVHAIREFHQGNKDVLVATDVASKGLD 152
Query: 348 VQQVSCVINYDLPSNRENYI 289
+ VIN+D+P + ENY+
Sbjct: 153 FPDIQHVINFDMPEDIENYV 172
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/81 (38%), Positives = 46/81 (56%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F VD++TE + F S +H + Q R +++ FR G +L+ TD+ +RG+D
Sbjct: 338 FTSSIQNVDYVTELLKQEQFHASGLHSEKPQDYRFKLVKAFRDGKVDILVATDVASRGLD 397
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+V+ VINYDLP E YIH
Sbjct: 398 FPEVTHVINYDLPDTIECYIH 418
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 65.7 bits (153), Expect = 4e-11
Identities = 32/81 (39%), Positives = 46/81 (56%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+Q + L + V +H D Q +R+ I++ FRTG VLI T+L+ RGID
Sbjct: 389 FVQSKDRAKELFHELIYDGINVDVIHSDRTQAQRDNIVKSFRTGKIWVLIATELMGRGID 448
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V+ VINYD P++ YIH
Sbjct: 449 FKGVNLVINYDFPTSAVAYIH 469
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = -3
Query: 534 CNFLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 355
CN +Q +V+ L + F+ +H M Q R + FR G R L+ +DL RG
Sbjct: 298 CNSVQ---RVELLARKILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRG 354
Query: 354 IDVQQVSCVINYDLPSNRENYIH 286
ID+Q V+ VIN+D P N E Y+H
Sbjct: 355 IDIQSVNVVINFDFPKNSETYLH 377
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT P V + +R P I + +ELTL G+ Q+Y +E E+ K+ L L+ L I
Sbjct: 234 SATFPISVRDFKEKHLRKPYEINLM-DELTLHGVTQYYAFVE-EKQKVHCLNTLFQKLQI 291
Query: 542 AQAVIFCNTRRR 507
Q++IFCN+ +R
Sbjct: 292 NQSIIFCNSVQR 303
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = -3
Query: 534 CNFLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 355
CN +Q +V+ L + F+ +H M Q R + FR G R L+ +DL RG
Sbjct: 298 CNSVQ---RVELLARKILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRG 354
Query: 354 IDVQQVSCVINYDLPSNRENYIH 286
ID+Q V+ VIN+D P N E Y+H
Sbjct: 355 IDIQSVNVVINFDFPKNSETYLH 377
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/72 (38%), Positives = 42/72 (58%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT P V + +R P I + +ELTL G+ Q+Y +E E+ K+ L L+ L I
Sbjct: 234 SATFPISVRDFKEKHLRKPYEINLM-DELTLHGVTQYYAFVE-EKQKVHCLNTLFQKLQI 291
Query: 542 AQAVIFCNTRRR 507
Q++IFCN+ +R
Sbjct: 292 NQSIIFCNSVQR 303
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 61.7 bits (143), Expect = 6e-10
Identities = 28/81 (34%), Positives = 48/81 (59%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F Q + + L + L+ T +HGD+ Q++REV ++ FR G R L+ TD+ ARG+D
Sbjct: 311 FAQTKKEANELALNSVLKQET-QVLHGDIPQKQREVTLKSFREGKFRCLVATDVAARGLD 369
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ ++ V+ + P + + YIH
Sbjct: 370 IPEIDLVVQCEPPKDVDAYIH 390
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 61.3 bits (142), Expect = 8e-10
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = -3
Query: 477 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 298
+ F + +HG +Q +RE + + GS +L+ TD+ RGID++ VS VINYD+ E
Sbjct: 307 KKFRATTLHGGRNQEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIE 366
Query: 297 NYIH 286
+Y H
Sbjct: 367 DYTH 370
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 61.3 bits (142), Expect = 8e-10
Identities = 23/53 (43%), Positives = 40/53 (75%)
Frame = -3
Query: 444 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
++Q +RE + F+TG +R+LI TD+ +RG+D++ ++ VINYD P + E+Y+H
Sbjct: 76 LEQYDREQALDDFKTGLARILIATDVASRGLDIKDITYVINYDFPRHIEDYVH 128
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/81 (30%), Positives = 47/81 (58%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ + L+ + ++F +H M Q ER +QF+ R+L+ T+L RG+D
Sbjct: 341 FVKSVQRCTALSHLLLKQNFPAICIHRGMKQEERLARYQQFKNFEKRMLVATNLFGRGMD 400
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+++V+ V NYD+P + + Y+H
Sbjct: 401 IERVNIVFNYDMPEDSDTYLH 421
Score = 36.3 bits (80), Expect = 0.025
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -1
Query: 668 PVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRR 507
P+ + V E +LTL G++Q+Y+ ++ E K L DL D L Q +IF + +R
Sbjct: 294 PMEVYVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDLLEFNQVIIFVKSVQR 347
Score = 32.3 bits (70), Expect = 0.41
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -2
Query: 265 FWS*GIAINFVT-EADRRALKDIEDFYHTSIVEMPSDV 155
F + G+AI FV+ EAD + L +++D + ++ E+P ++
Sbjct: 429 FGTKGLAITFVSDEADAKTLNEVQDRFEVNVGELPDEI 466
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 58.8 bits (136), Expect = 4e-09
Identities = 23/71 (32%), Positives = 44/71 (61%)
Frame = -3
Query: 498 LTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINY 319
L H T +H + Q ER + +F++G+ ++L+ TD+ +RG+D+ QV V+N
Sbjct: 263 LVSMFHKLGLTCVGLHSLLSQGERLAALARFKSGTIKILVATDVASRGLDIPQVELVVNS 322
Query: 318 DLPSNRENYIH 286
++P++ ++YIH
Sbjct: 323 NIPADPKDYIH 333
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 54.8 bits (126), Expect = 7e-08
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = -3
Query: 450 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
G Q +R M + ++ R+LI+TDL ARGID + V+ V+N D+P N E Y+H
Sbjct: 246 GSQTQAKRLEAMEKLKSFHCRILISTDLTARGIDAENVNLVVNMDVPHNGETYLH 300
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/88 (29%), Positives = 49/88 (55%)
Frame = -3
Query: 549 VYCTSCNFLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTD 370
V+ +SCN +++ S++ ++ D V +HG Q++R +F S +L+ TD
Sbjct: 823 VFFSSCNSVKYHSEL------LNYIDLPVLEIHGKQKQQKRTTTFFEFCNAKSGILLCTD 876
Query: 369 LLARGIDVQQVSCVINYDLPSNRENYIH 286
+ ARG+D+ +V ++ YD + + YIH
Sbjct: 877 VAARGLDIPEVDWIVQYDPADDPKEYIH 904
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/71 (32%), Positives = 41/71 (57%)
Frame = -3
Query: 498 LTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINY 319
LT + L +H M QR+R + +F+ ++ +L+ TD+ ARG+D+ + VI+Y
Sbjct: 472 LTSILRLVQLNPLPLHASMQQRQRLKNLDRFKASNTGLLLATDVAARGLDIANIEHVIHY 531
Query: 318 DLPSNRENYIH 286
+P + E Y+H
Sbjct: 532 QVPKDPEVYVH 542
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/60 (40%), Positives = 38/60 (63%)
Frame = -3
Query: 465 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+ A+HG M + R I FR S +L+ TD++ARG+D+ +V+ VI YD PS+ ++H
Sbjct: 118 IMALHGKM-KSNRHKIFDSFRKLESGILVCTDVMARGVDIPEVNWVIQYDPPSSANAFVH 176
>SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11)
Length = 87
Score = 49.6 bits (113), Expect = 3e-06
Identities = 17/43 (39%), Positives = 31/43 (72%)
Frame = -3
Query: 414 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+QF+ R+L+ T+L RG+D+++V+ V NYD+P + + Y+H
Sbjct: 6 QQFKNFEKRMLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLH 48
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 45.6 bits (103), Expect(2) = 8e-06
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = -3
Query: 450 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
G+ R R +F+ ++ +L+ TD+ +RG+D VS VIN+D P++ +YIH
Sbjct: 728 GNSGTRIRCERFEKFQNKTADILVCTDIASRGLDTSDVSHVINFDFPNSMVDYIH 782
Score = 21.8 bits (44), Expect(2) = 8e-06
Identities = 7/29 (24%), Positives = 14/29 (48%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDM 442
F S DWL + + ++ +HG++
Sbjct: 660 FCNSASSCDWLARHLEQHNLSLIRLHGNI 688
>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = -3
Query: 507 VDWLTESMHLRD-FTVSAMHGD------MDQREREVIMRQFRTGSSRVLITTDLLARGID 349
V+W+ ES L+ F A+ G M Q+E+E+I+ +F+ G +LI T + G+D
Sbjct: 954 VEWIKESEDLKHKFRPKALVGGGDGVVGMSQQEQELIIEEFKKGVVNILIATSVAEEGLD 1013
Query: 348 VQQVSCVINYDLPSN 304
++ S VI YD N
Sbjct: 1014 IKDCSFVIRYDTYGN 1028
>SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -3
Query: 492 ESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSS-RVLITTDLLARGIDVQQVSCVINYD 316
E M LR S G M QRE+E ++ +FR GS ++I T + G+D+ S VI YD
Sbjct: 583 ELMPLRLVGNSDGRGGMTQREQEEVIAKFRAGSECNIIIATTVAEEGLDIDDCSYVIRYD 642
Query: 315 LPSN 304
+ N
Sbjct: 643 MMGN 646
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/59 (30%), Positives = 35/59 (59%)
Frame = -3
Query: 462 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
S ++ +DQ R + + +F+ + V++ TD+ ARGID+ + VIN+ P + ++H
Sbjct: 503 SYVYSSLDQTARTINVGKFQHKKTMVMVVTDVAARGIDIPMLDNVINFHFPPKAKLFVH 561
>SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19)
Length = 1463
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/48 (37%), Positives = 32/48 (66%)
Frame = -3
Query: 432 EREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYI 289
E+EVI++ FRTG ++LI+T +L G+DV + V+ +D N ++ +
Sbjct: 605 EQEVILKSFRTGRIKLLISTSVLEEGLDVPVCNLVVRFDSTMNLKSLV 652
>SB_23184| Best HMM Match : Helicase_C (HMM E-Value=7.8e-23)
Length = 226
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = -3
Query: 480 LRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 316
L V A+H +D E++++M +F G S+VLI+T ++ G+DV + ++ D
Sbjct: 90 LAGLRVEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMD 144
>SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = -3
Query: 369 LLARGIDVQQVSCVINYDLPSNRENYIH 286
L RGID+Q V+ VIN+D P N E Y+H
Sbjct: 2 LFTRGIDIQSVNVVINFDFPKNSETYLH 29
>SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = -3
Query: 369 LLARGIDVQQVSCVINYDLPSNRENYIH 286
L RGID+Q V+ VIN+D P N E Y+H
Sbjct: 2 LFTRGIDIQSVNVVINFDFPKNSETYLH 29
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = -3
Query: 498 LTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 367
L ++ DF V+ +HGDMDQ ER ++ QF+ +L+ TD+
Sbjct: 745 LATNLRKNDFEVALLHGDMDQFERSKVLGQFKKREIPILVATDV 788
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = -3
Query: 441 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
D + +R FRTG ++L+ T+ RG+D +++ V ++P N E Y+H
Sbjct: 463 DPTKYHKFLRDFRTGQIQLLVGTEETVRGLDFKELDHVYLMEVPKNVEEYLH 514
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
FLQ L + L +HG++ Q +R +++F+ G +L+ TDL ARG+D
Sbjct: 14 FLQTKWMAHKLRIVLGLMGLNADELHGNLTQLQRLEALQKFKNGEVDILVATDLAARGLD 73
Query: 348 VQQV 337
+ V
Sbjct: 74 ITGV 77
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -3
Query: 453 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYI 289
H M +R + ++F +G R + T G+D V +I+Y++P + E+Y+
Sbjct: 819 HAGMSAAQRRKVQKRFMSGELRAVAATVAFGMGLDKSDVRAIIHYNMPKSFESYV 873
>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
Length = 556
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = -3
Query: 549 VYCTSCNFLQHPSQVDWLTESMHLRDFTVSAMHGDM-DQREREVIMRQFRTGSS-RVLIT 376
+YC S N +V L+E++ ++ T + H D ++EV+ ++ S RV++
Sbjct: 261 IYCKSINACGDIYEV--LSENVESKE-TYAMFHSKTPDSIQKEVLGEFIKSNSKIRVVVA 317
Query: 375 TDLLARGIDVQQVSCVINYDLPSNRENYI 289
T L G+D+ V +I++ +PS E+Y+
Sbjct: 318 TCALGMGVDIPDVDHIIHFGIPSEVEHYV 346
>SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18)
Length = 282
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = -3
Query: 462 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYI 289
S+ M ++E +++ FR +L+ T ++ G+DV + + V+ +D P N +Y+
Sbjct: 122 SSSDTQMGSTKQEKVLKMFRKHQINLLVATSVVEEGLDVPKCNFVVRFDFPQNFRSYV 179
>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2722
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 465 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 346
V+ H + ER++I FR G+ RVL+ T L G+++
Sbjct: 557 VAFHHAGLTFDERDIIEGAFRQGTIRVLVATSTLCSGVNL 596
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -3
Query: 444 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 316
+ Q+E+ ++ +FR G L++T + G+D+ V ++ +D
Sbjct: 564 LSQKEQLEVVHRFRMGGYNTLVSTCVGEEGLDIGDVDLIVCFD 606
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = -3
Query: 453 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 292
H + +R+ + +++ G V+ T G+D V V ++ LP + E Y
Sbjct: 279 HAGLKSDKRDKVQQEWMEGKVAVICATISFGMGVDKGDVRFVAHWSLPQSMEGY 332
>SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094)
Length = 436
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 612 KLFNTFQGKLFLLYKYAYRISHKASRYFQYIIRHG 716
+L T GK FLL Y YR S K + +F + R G
Sbjct: 387 RLMETQSGKHFLLIVYIYRESRKVTVHFGHDYRKG 421
>SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4)
Length = 494
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -3
Query: 441 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 295
D ++EV+ + + RV + T +L + + V +I+Y +PS E+
Sbjct: 8 DYIQKEVLEEFTKPNNIRVAVATRVLGFRVSILHVESLIHYGIPSEEEH 56
>SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 465 VSAMHGDMDQREREVIMRQF--RTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 292
V +H ++ I+ F + G+ R+LI T G+D + V VI+Y + E Y
Sbjct: 321 VEMLHSCTPHANKQNILDSFSQQDGTVRLLIATIAFGMGVDCKGVKRVIHYGPSKSVEAY 380
Query: 291 I 289
I
Sbjct: 381 I 381
>SB_22696| Best HMM Match : 7tm_1 (HMM E-Value=2.9)
Length = 127
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -1
Query: 572 LCDLYDTLSIAQAVIF---CNTRRRWIGSLNLCICVTLLYLLCMETWI 438
L DL + +S AV+ C+ RR+W S +LC T YL+ + T I
Sbjct: 15 LFDLLNNVSPLIAVLLSCNCSWRRKWTHSHHLCNVWTTAYLVTVPTSI 62
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 351 DVQQVSCVINYDLPSNRENYIH 286
D+ + VIN+D P+ E+Y+H
Sbjct: 351 DISDIKFVINFDFPNCTEDYVH 372
>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4482
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 641 ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQ 537
E L + Q AI+L EW+ C LY ++ + Q
Sbjct: 3881 ERPLSEVLQLTGAIQLTEWEFSEACHLYTSVRVGQ 3915
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 387 VLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
V+ L + + VS VIN+D+P E Y+H
Sbjct: 381 VVFVESKLGADMLAEAVSKVINFDMPPTYEEYVH 414
>SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 438 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+ E+EVI Q + I +RG+D+ V+ VI D ++ +H
Sbjct: 84 KEEKEVIEAQLPLSYNSRTIKDGFASRGLDIPNVTHVIQLDFATDAAQMLH 134
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,159,069
Number of Sequences: 59808
Number of extensions: 474510
Number of successful extensions: 1135
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -