Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00086
(722 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 124 6e-29
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 124 6e-29
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 124 6e-29
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 116 2e-26
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 107 1e-23
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 79 4e-15
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 79 4e-15
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 78 7e-15
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 78 7e-15
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 78 7e-15
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 77 9e-15
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 77 1e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 76 3e-14
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 75 5e-14
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 74 1e-13
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 74 1e-13
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 71 6e-13
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 71 8e-13
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 71 1e-12
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 70 2e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 69 3e-12
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 68 6e-12
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 66 2e-11
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 66 2e-11
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 66 2e-11
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 66 2e-11
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 65 4e-11
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 65 5e-11
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 65 5e-11
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 64 9e-11
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 64 1e-10
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 64 1e-10
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 63 2e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 63 2e-10
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 61 6e-10
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 61 8e-10
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 60 1e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 60 2e-09
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 59 3e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 59 3e-09
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 59 3e-09
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 57 1e-08
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 54 7e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 54 1e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 53 2e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 52 3e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 52 5e-07
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 52 5e-07
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 52 5e-07
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 52 5e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 51 7e-07
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 51 7e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 50 1e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 48 5e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 48 6e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 48 8e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 48 8e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 47 1e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 47 1e-05
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 45 6e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 43 2e-04
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 42 3e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 4e-04
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 40 0.001
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 40 0.002
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 40 0.002
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 38 0.005
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 38 0.009
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 35 0.047
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 35 0.047
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 34 0.083
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 33 0.14
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 33 0.25
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 32 0.33
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 32 0.44
At5g01710.1 68418.m00088 expressed protein 31 0.58
At4g37020.1 68417.m05244 expressed protein 26 0.83
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 30 1.4
At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domai... 30 1.4
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 29 2.4
At5g04960.1 68418.m00525 pectinesterase family protein contains ... 29 4.1
At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina... 29 4.1
At5g16430.1 68418.m01920 hypothetical protein 28 5.5
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 28 7.2
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica... 28 7.2
At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3... 28 7.2
At1g01770.1 68414.m00096 expressed protein 27 9.5
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 124 bits (299), Expect = 6e-29
Identities = 57/81 (70%), Positives = 67/81 (82%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+ +VDWLT+ M RD TVSA HGDMDQ R++IMR+FR+GSSRVLITTDLLARGID
Sbjct: 284 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 343
Query: 348 VQQVSCVINYDLPSNRENYIH 286
VQQVS VIN+DLP+ ENY+H
Sbjct: 344 VQQVSLVINFDLPTQPENYLH 364
Score = 114 bits (274), Expect = 6e-26
Identities = 51/72 (70%), Positives = 63/72 (87%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SATMP + LE++R FM PVRILV+++ELTLEGIKQFY+ +E EEWKLETLCDLY+TL+I
Sbjct: 219 SATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAI 278
Query: 542 AQAVIFCNTRRR 507
Q+VIF NTRR+
Sbjct: 279 TQSVIFVNTRRK 290
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+AINFVT D R L DI+ FY+ + E+PS+VA+L+
Sbjct: 376 GVAINFVTRDDERMLFDIQKFYNVVVEELPSNVADLL 412
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 124 bits (299), Expect = 6e-29
Identities = 57/81 (70%), Positives = 67/81 (82%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+ +VDWLT+ M RD TVSA HGDMDQ R++IMR+FR+GSSRVLITTDLLARGID
Sbjct: 286 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 345
Query: 348 VQQVSCVINYDLPSNRENYIH 286
VQQVS VIN+DLP+ ENY+H
Sbjct: 346 VQQVSLVINFDLPTQPENYLH 366
Score = 113 bits (272), Expect = 1e-25
Identities = 50/72 (69%), Positives = 63/72 (87%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SATMP + LE++R FM PVRILV+++ELTLEGIKQFY+ ++ EEWKLETLCDLY+TL+I
Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 280
Query: 542 AQAVIFCNTRRR 507
Q+VIF NTRR+
Sbjct: 281 TQSVIFVNTRRK 292
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+AINF+T D R + DI+ FY+ + E+PS+VA+L+
Sbjct: 378 GVAINFMTSEDERMMADIQRFYNVVVEELPSNVADLL 414
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 124 bits (299), Expect = 6e-29
Identities = 57/81 (70%), Positives = 67/81 (82%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+ +VDWLT+ M RD TVSA HGDMDQ R++IMR+FR+GSSRVLITTDLLARGID
Sbjct: 284 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 343
Query: 348 VQQVSCVINYDLPSNRENYIH 286
VQQVS VIN+DLP+ ENY+H
Sbjct: 344 VQQVSLVINFDLPTQPENYLH 364
Score = 113 bits (271), Expect = 1e-25
Identities = 50/72 (69%), Positives = 63/72 (87%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SATMP + LE++R FM PVRILV+++ELTLEGIKQFY+ +E E+WKLETLCDLY+TL+I
Sbjct: 219 SATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAI 278
Query: 542 AQAVIFCNTRRR 507
Q+VIF NTRR+
Sbjct: 279 TQSVIFVNTRRK 290
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+AINFVT D+R L DI+ FY+ + E+PS+VA+L+
Sbjct: 376 GVAINFVTLDDQRMLFDIQKFYNVVVEELPSNVADLL 412
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 116 bits (278), Expect = 2e-26
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F +VD+L+E M +FTVS+MHGDM Q+ER+ IM +FR+G SRVLITTD+ ARGID
Sbjct: 280 FCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGID 339
Query: 348 VQQVSCVINYDLPSNRENYIH 286
VQQVS VINYDLP+NRE YIH
Sbjct: 340 VQQVSLVINYDLPNNRELYIH 360
Score = 114 bits (275), Expect = 5e-26
Identities = 48/72 (66%), Positives = 65/72 (90%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT+P ++LE++ FM +PV+ILV+++ELTLEGIKQF++A+E EEWK +TLCDLYDTL+I
Sbjct: 215 SATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTI 274
Query: 542 AQAVIFCNTRRR 507
QAVIFCNT+R+
Sbjct: 275 TQAVIFCNTKRK 286
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 143
G+AINFV D + L+DIE +Y T I EMP +VA+LI
Sbjct: 372 GVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 107 bits (256), Expect = 1e-23
Identities = 45/72 (62%), Positives = 61/72 (84%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT+P ++LE++ FM DPVRILV+ +ELTLEGIKQ+Y+ ++ EEWK +TLCDLY L+I
Sbjct: 202 SATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTI 261
Query: 542 AQAVIFCNTRRR 507
QA+IFCNTR++
Sbjct: 262 NQAIIFCNTRQK 273
Score = 101 bits (242), Expect = 5e-22
Identities = 49/81 (60%), Positives = 59/81 (72%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F +VDWLTE M +F VS+MHGD Q+ER+ IM QFR+ SRVLI +D+ ARGID
Sbjct: 267 FCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGID 326
Query: 348 VQQVSCVINYDLPSNRENYIH 286
VQ VS VINYD+P+N E YIH
Sbjct: 327 VQTVSHVINYDIPNNPELYIH 347
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = -2
Query: 253 GIAINFVTEADRRALKDIEDFYHTSIVEMPSDV 155
G+AINFV +D + LKDIE Y T I EMP+D+
Sbjct: 359 GVAINFVKSSDMKDLKDIERHYGTKIREMPADL 391
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 78.6 bits (185), Expect = 4e-15
Identities = 31/81 (38%), Positives = 56/81 (69%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ D L + + +F +++HGD Q+EREV +R F+TG + +L+ TD+ ARG+D
Sbjct: 414 FVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLD 473
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V+ V+N+DLP++ ++Y+H
Sbjct: 474 IPHVAHVVNFDLPNDIDDYVH 494
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 78.6 bits (185), Expect = 4e-15
Identities = 31/81 (38%), Positives = 56/81 (69%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ D L + + +F +++HGD Q+EREV +R F+TG + +L+ TD+ ARG+D
Sbjct: 414 FVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLD 473
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V+ V+N+DLP++ ++Y+H
Sbjct: 474 IPHVAHVVNFDLPNDIDDYVH 494
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 77.8 bits (183), Expect = 7e-15
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = -3
Query: 504 DWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 325
D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+
Sbjct: 417 DQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVV 475
Query: 324 NYDLPSNRENYIH 286
NYD P+ E+Y+H
Sbjct: 476 NYDFPNGVEDYVH 488
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 77.8 bits (183), Expect = 7e-15
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = -3
Query: 504 DWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 325
D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+
Sbjct: 417 DQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVV 475
Query: 324 NYDLPSNRENYIH 286
NYD P+ E+Y+H
Sbjct: 476 NYDFPNGVEDYVH 488
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 77.8 bits (183), Expect = 7e-15
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = -3
Query: 504 DWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 325
D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+
Sbjct: 417 DQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVV 475
Query: 324 NYDLPSNRENYIH 286
NYD P+ E+Y+H
Sbjct: 476 NYDFPNGVEDYVH 488
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 77.4 bits (182), Expect = 9e-15
Identities = 31/81 (38%), Positives = 54/81 (66%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ D L + + F + +HGD Q+EREV +R F+TG + +L+ TD+ ARG+D
Sbjct: 411 FVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLD 470
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V+ V+N+DLP++ ++Y+H
Sbjct: 471 IPHVAHVVNFDLPNDIDDYVH 491
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 77.0 bits (181), Expect = 1e-14
Identities = 30/81 (37%), Positives = 52/81 (64%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ D +T + + + A+HGD Q ER+ ++ +F++G S ++ TD+ ARG+D
Sbjct: 416 FVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLD 475
Query: 348 VQQVSCVINYDLPSNRENYIH 286
V+ + CV+NYD P+ E+YIH
Sbjct: 476 VKDIKCVVNYDFPNTLEDYIH 496
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDTLS 546
SAT P +V ++R F+RDP + ++ +L + I Q + E L L +
Sbjct: 350 SATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD 409
Query: 545 IAQAVIFCNTRR 510
++ +IF T+R
Sbjct: 410 GSKILIFVETKR 421
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 75.8 bits (178), Expect = 3e-14
Identities = 30/64 (46%), Positives = 46/64 (71%)
Frame = -3
Query: 477 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 298
R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E
Sbjct: 496 RTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVE 555
Query: 297 NYIH 286
+Y+H
Sbjct: 556 DYVH 559
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 74.9 bits (176), Expect = 5e-14
Identities = 31/81 (38%), Positives = 50/81 (61%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
FL D +T + + + ++HGD Q ER+ ++ +FR+G S ++ TD+ ARG+D
Sbjct: 350 FLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLD 409
Query: 348 VQQVSCVINYDLPSNRENYIH 286
V+ V VINYD P + E+Y+H
Sbjct: 410 VKDVKYVINYDFPGSLEDYVH 430
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 73.7 bits (173), Expect = 1e-13
Identities = 31/64 (48%), Positives = 44/64 (68%)
Frame = -3
Query: 477 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 298
R F +HGD Q ER+ ++ QFR+G S VLI TD+ ARG+D++ + VINYD P+ E
Sbjct: 702 RHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVE 761
Query: 297 NYIH 286
+Y+H
Sbjct: 762 DYVH 765
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 73.7 bits (173), Expect = 1e-13
Identities = 29/81 (35%), Positives = 55/81 (67%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ D L + + F +++HGD Q+EREV ++ F++G + +L+ TD+ ARG+D
Sbjct: 424 FVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLD 483
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V+ V+N+DLP++ ++Y+H
Sbjct: 484 IPHVAHVVNFDLPNDIDDYVH 504
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/81 (37%), Positives = 49/81 (60%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F ++ + VD + E + L+ A+HG DQ +RE + F+ G VL+ TD+ ++G+D
Sbjct: 403 FCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLD 462
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ VINYD+P+ ENY+H
Sbjct: 463 FPDIQHVINYDMPAEIENYVH 483
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 70.9 bits (166), Expect = 8e-13
Identities = 32/81 (39%), Positives = 49/81 (60%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F Q D L+ ++ R F A+HGD+ Q +RE + FR G +L+ TD+ ARG+D
Sbjct: 355 FTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLD 413
Query: 348 VQQVSCVINYDLPSNRENYIH 286
V V +I+Y+LP+N E ++H
Sbjct: 414 VPNVDLIIHYELPNNTETFVH 434
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/81 (35%), Positives = 50/81 (61%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F + VD + + L F V+A+HGD DQ R +++F++G VLI TD+ ARG+D
Sbjct: 479 FASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLD 538
Query: 348 VQQVSCVINYDLPSNRENYIH 286
++ + V+NYD+ + + ++H
Sbjct: 539 IKSLKTVVNYDIAKDMDMHVH 559
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCD 564
SATMP V +++R + DP+R+ V + + E I Q I + KL L +
Sbjct: 413 SATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLE 465
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/81 (38%), Positives = 46/81 (56%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+Q + L + + + +H D+ ERE + QFR G VLI TD++ARG+D
Sbjct: 386 FVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMD 445
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ ++CVINYD P + YIH
Sbjct: 446 FKGINCVINYDFPDSASAYIH 466
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT+PD V E++R M D VR+++ ++ E +KQ + EE KL L +
Sbjct: 321 SATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLN 380
Query: 542 AQAVIFCNTRRR 507
+IF ++ R
Sbjct: 381 PPVLIFVQSKER 392
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 68.9 bits (161), Expect = 3e-12
Identities = 29/81 (35%), Positives = 48/81 (59%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F ++ + VD + E + L+ A+HG DQ +R+ + F+ G VL+ TD+ ++G+D
Sbjct: 354 FCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLD 413
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ VINYD+P ENY+H
Sbjct: 414 FPDIQHVINYDMPGEIENYVH 434
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 68.1 bits (159), Expect = 6e-12
Identities = 27/64 (42%), Positives = 43/64 (67%)
Frame = -3
Query: 477 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 298
+ + A+HGD+ Q +RE + FR G+ +L+ TD+ ARG+DV V VI+Y+LP+N E
Sbjct: 383 KSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTE 442
Query: 297 NYIH 286
++H
Sbjct: 443 TFVH 446
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/81 (35%), Positives = 49/81 (60%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ S+ L + + +F +H M Q ER + F+ G R+L+ TDL+ RGID
Sbjct: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGID 353
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+++V+ VINYD+P + + Y+H
Sbjct: 354 IERVNIVINYDMPDSADTYLH 374
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLS 546
SAT+ ++ V + FM+DP+ I V E +LTL G+ Q YI + E K L DL D L
Sbjct: 229 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-EMEKNRKLNDLLDALD 287
Query: 545 IAQAVIFCNTRRR 507
Q VIF + R
Sbjct: 288 FNQVVIFVKSVSR 300
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/81 (35%), Positives = 49/81 (60%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ S+ L + + +F +H M Q ER + F+ G R+L+ TDL+ RGID
Sbjct: 211 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGID 270
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+++V+ VINYD+P + + Y+H
Sbjct: 271 IERVNIVINYDMPDSADTYLH 291
Score = 48.0 bits (109), Expect = 6e-06
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLS 546
SAT+ ++ V + FM+DP+ I V E +LTL G+ Q YI + E K L DL D L
Sbjct: 146 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-EMEKTRKLNDLLDALD 204
Query: 545 IAQAVIFCNTRRR 507
Q VIF + R
Sbjct: 205 FNQVVIFVKSVSR 217
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/81 (35%), Positives = 49/81 (60%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F++ S+ L + + +F +H M Q ER + F+ G R+L+ TDL+ RGID
Sbjct: 294 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGID 353
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+++V+ VINYD+P + + Y+H
Sbjct: 354 IERVNIVINYDMPDSADTYLH 374
Score = 48.0 bits (109), Expect = 6e-06
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLS 546
SAT+ ++ V + FM+DP+ I V E +LTL G+ Q YI + E K L DL D L
Sbjct: 229 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-EMEKTRKLNDLLDALD 287
Query: 545 IAQAVIFCNTRRR 507
Q VIF + R
Sbjct: 288 FNQVVIFVKSVSR 300
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/85 (34%), Positives = 48/85 (56%)
Frame = -3
Query: 540 TSCNFLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 361
T+ F+ D + +++ + V+ +HG Q +RE+ + FR VL+ TD++
Sbjct: 578 TAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVG 637
Query: 360 RGIDVQQVSCVINYDLPSNRENYIH 286
RGID+ V+ VINYD+P + E Y H
Sbjct: 638 RGIDIPDVAHVINYDMPKHIEMYTH 662
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SATMP V ++R ++R+PV + + T + I Q I ++ E K L L D L
Sbjct: 518 SATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMK-ESEKFFRLQKLLDELGE 576
Query: 542 AQAVIFCNTRR 510
A++F NT++
Sbjct: 577 KTAIVFVNTKK 587
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 65.3 bits (152), Expect = 4e-11
Identities = 26/81 (32%), Positives = 48/81 (59%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+ H Q+ + + R + MHGD+ + R ++++F+ G +VL+T +L ARG+D
Sbjct: 413 FMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLD 472
Query: 348 VQQVSCVINYDLPSNRENYIH 286
V + V+N +LP++ +Y H
Sbjct: 473 VAECDLVVNLELPTDAVHYAH 493
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F ++V+ L + + ++ +H M Q R + FR G+ R L+ TDL RGID
Sbjct: 374 FCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID 433
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+Q V+ VIN+D P N E Y+H
Sbjct: 434 IQAVNVVINFDFPKNAETYLH 454
Score = 50.8 bits (116), Expect = 9e-07
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT P V + F+ +P I + +ELTL+GI QFY +E E K+ L L+ L I
Sbjct: 311 SATFPVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYAFVE-ERQKIHCLNTLFSKLQI 368
Query: 542 AQAVIFCNTRRR 507
Q++IFCN+ R
Sbjct: 369 NQSIIFCNSVNR 380
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F ++V+ L + + ++ +H M Q R + FR G+ R L+ TDL RGID
Sbjct: 374 FCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID 433
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+Q V+ VIN+D P N E Y+H
Sbjct: 434 IQAVNVVINFDFPKNAETYLH 454
Score = 50.8 bits (116), Expect = 9e-07
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT P V + F+ +P I + +ELTL+GI QFY +E E K+ L L+ L I
Sbjct: 311 SATFPVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYAFVE-ERQKIHCLNTLFSKLQI 368
Query: 542 AQAVIFCNTRRR 507
Q++IFCN+ R
Sbjct: 369 NQSIIFCNSVNR 380
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 64.1 bits (149), Expect = 9e-11
Identities = 25/58 (43%), Positives = 40/58 (68%)
Frame = -3
Query: 459 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
A+HGD+ Q +RE + FR G VL+ TD+ +RG+D+ V VI+Y+LP++ E ++H
Sbjct: 379 ALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVH 436
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/81 (35%), Positives = 46/81 (56%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F ++V+ L + + ++ +H M Q R + +FR G+ R L+ TDL RGID
Sbjct: 367 FCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGID 426
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+Q V+ VIN+D P E+Y+H
Sbjct: 427 IQAVNVVINFDFPRTSESYLH 447
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT P V +R P I + ++LTL G+ Q+Y +E E K+ L L+ L I
Sbjct: 304 SATFPVTVKAFKDRHLRKPYVINLM-DQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQI 361
Query: 542 AQAVIFCNTRRR 507
Q++IFCN+ R
Sbjct: 362 NQSIIFCNSVNR 373
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/81 (35%), Positives = 46/81 (56%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F ++V+ L + + ++ +H M Q R + +FR G+ R L+ TDL RGID
Sbjct: 367 FCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGID 426
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+Q V+ VIN+D P E+Y+H
Sbjct: 427 IQAVNVVINFDFPRTSESYLH 447
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT P V +R P I + ++LTL G+ Q+Y +E E K+ L L+ L I
Sbjct: 304 SATFPVTVKAFKDRHLRKPYVINLM-DQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQI 361
Query: 542 AQAVIFCNTRRR 507
Q++IFCN+ R
Sbjct: 362 NQSIIFCNSVNR 373
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/81 (33%), Positives = 47/81 (58%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+Q + D L M + ++HG DQ +RE + F+ +LI T + ARG+D
Sbjct: 782 FVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLD 841
Query: 348 VQQVSCVINYDLPSNRENYIH 286
V+++ V+N+D P++ E+Y+H
Sbjct: 842 VKELELVVNFDAPNHYEDYVH 862
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/81 (35%), Positives = 45/81 (55%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F ++V+ L + + ++ +H M Q R + FR G+ R L+ TDL RGID
Sbjct: 397 FCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGID 456
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+Q V+ VIN+D P E+Y+H
Sbjct: 457 IQAVNVVINFDFPRTSESYLH 477
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/72 (36%), Positives = 40/72 (55%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 543
SAT P V +++ P I+ ++LTL G+ Q+Y +E E K+ L L+ L I
Sbjct: 334 SATFPVTVKSFKDRYLKKPY-IINLMDQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQI 391
Query: 542 AQAVIFCNTRRR 507
Q++IFCN+ R
Sbjct: 392 NQSIIFCNSVNR 403
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/81 (37%), Positives = 39/81 (48%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F V + TE M + D VS +HG MDQ R F +L+ TD+ ARG+D
Sbjct: 340 FFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLD 399
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V +I YD P YIH
Sbjct: 400 IPSVDWIIQYDPPDKPTEYIH 420
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 60.9 bits (141), Expect = 8e-10
Identities = 32/88 (36%), Positives = 50/88 (56%)
Frame = -3
Query: 549 VYCTSCNFLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTD 370
V+CTS L+H S + + + V + +M QR R + +FR + +LI TD
Sbjct: 507 VFCTSVTDLRHISGL------LKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATD 560
Query: 369 LLARGIDVQQVSCVINYDLPSNRENYIH 286
L+ARGID++ V +I+Y LP + E Y+H
Sbjct: 561 LVARGIDIKNVRTIIHYKLPHSAEVYVH 588
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = -3
Query: 471 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 292
F + G M Q +R + +F+ G +L+ TD+ +RG+D+ V VINYD+P+N ++Y
Sbjct: 285 FRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDY 344
Query: 291 IH 286
IH
Sbjct: 345 IH 346
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFY 609
SATM V ++ R +R+PV+I + T++ +KQ Y
Sbjct: 202 SATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQY 239
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/81 (33%), Positives = 46/81 (56%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F+ V+++ L + S +GDMDQ R++ + +FR + +LI TD+ ARGID
Sbjct: 277 FVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGID 336
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ + VIN+D P + ++H
Sbjct: 337 IPLLDNVINWDFPPRPKIFVH 357
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 59.3 bits (137), Expect = 3e-09
Identities = 23/58 (39%), Positives = 45/58 (77%)
Frame = -3
Query: 471 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 298
+ V+++HG++ + +R+ I+++F+ ++VLI TD++ARG D Q+V+ V+NY+LP+ E
Sbjct: 365 YDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYE 422
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCD-LYDTLS 546
SAT + V + ++DP ++ V++E+L L+ +KQ+ + E+ K+E + D + +
Sbjct: 280 SATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELGD 339
Query: 545 IAQAVIFCNTR 513
I Q +IF T+
Sbjct: 340 IGQTIIFVKTK 350
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 59.3 bits (137), Expect = 3e-09
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = -3
Query: 456 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+HG M+Q +R F+T VL++TD+ ARG+D +V C+I YD P Y+H
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVH 435
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/81 (33%), Positives = 44/81 (54%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
F + + + L + R + ++HG+ Q ER + F+ GS +L+ TD+ ARG+D
Sbjct: 372 FALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLD 431
Query: 348 VQQVSCVINYDLPSNRENYIH 286
+ V VINY P E+Y+H
Sbjct: 432 IPDVEVVINYTFPLTTEDYVH 452
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = -3
Query: 480 LRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNR 301
L+ + + HG MDQ+ R+ + F SS VL+ TD+ ARG+D+ + V+ YD P +
Sbjct: 291 LKSISFFSTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDP 350
Query: 300 ENYIH 286
+ +IH
Sbjct: 351 DVFIH 355
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = -3
Query: 459 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
A+HG++ Q +REV + FR G L+ T++ ARG+D+ V +I + P E YIH
Sbjct: 375 ALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIH 432
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = -3
Query: 465 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
V +H Q R + +FR S +L+T+D+ ARG+D VS V+ LPS+RE YIH
Sbjct: 365 VREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIH 424
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = -3
Query: 459 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
AMH Q R + +F++G +L+ TD+ +RG+D+ V VINYD+P + +Y+H
Sbjct: 331 AMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVH 388
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = -3
Query: 465 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
V +H Q R + +FR + +L+T+D+ ARG+D VS V+ LPS+RE YIH
Sbjct: 667 VREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIH 726
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = -3
Query: 456 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+ GDM+ R + + R G +L++TD+ ARGID+ + + + N+DLP +Y+H
Sbjct: 371 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 427
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = -3
Query: 456 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
+ GDM+ R + + R G +L++TD+ ARGID+ + + + N+DLP +Y+H
Sbjct: 214 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 270
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = -3
Query: 480 LRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNR 301
L+ ++ +HGDM Q R+ + F SS L+ TD+ ARG+D+ + V+ YD P +
Sbjct: 300 LKSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDP 359
Query: 300 ENYIH 286
+ H
Sbjct: 360 NMFNH 364
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/55 (41%), Positives = 36/55 (65%)
Frame = -3
Query: 450 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
G ++Q R ++ FR G +VL+ +D L RG+DV+ V+ VINYD+P + +IH
Sbjct: 360 GGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIH 414
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = -3
Query: 459 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
++HG+ +ER +M F G VL++T +L RG+D+ V VI +D+PS + YIH
Sbjct: 387 SIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIH 444
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = -3
Query: 459 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
++HG+ +ER +M F G VL++T +L RG+D+ V VI +D+PS + YIH
Sbjct: 250 SIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIH 307
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = -3
Query: 474 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 295
+ V +H Q R + +FR +L+T+D+ ARG+D V+ V+ LP +RE
Sbjct: 336 NLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQ 395
Query: 294 YIH 286
YIH
Sbjct: 396 YIH 398
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = -3
Query: 480 LRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNR 301
L + +HG++ Q +R + FR LI TD+ ARG+D+ V VINY P
Sbjct: 434 LAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREI 493
Query: 300 ENYIH 286
++Y+H
Sbjct: 494 DSYVH 498
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = -3
Query: 465 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
V +H Q R + +F+ + +L+T+D+ ARG++ V+ VI +PS+RE YIH
Sbjct: 661 VREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIH 720
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = -3
Query: 471 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 292
F + G +DQ +R QF + +L+ T++ ARG+D V ++ YD P N +Y
Sbjct: 425 FDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDY 484
Query: 291 IH 286
IH
Sbjct: 485 IH 486
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 47.6 bits (108), Expect = 8e-06
Identities = 18/50 (36%), Positives = 34/50 (68%)
Frame = -3
Query: 435 REREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
R +E + F++ +LI T + ARG+DV+++ V+N+D P++ E+Y+H
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVH 700
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = -3
Query: 465 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
V +H Q R + +F+ + +L+T+D+ ARG++ V+ VI +PS+RE YIH
Sbjct: 614 VREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIH 673
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 46.8 bits (106), Expect = 1e-05
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMH-LRD-FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 355
FL QV ++ E+ + LR + ++HG M Q +R + QF S VL TD+LARG
Sbjct: 322 FLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIERQS-VLFCTDVLARG 380
Query: 354 IDVQQ-VSCVINYDLPSNRENYIH 286
+D + V V+ D P + +YIH
Sbjct: 381 LDFDKAVDWVVQVDCPEDVASYIH 404
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTL--EGIKQFYIAIELEEWKLETLCDLYDTL 549
SAT V +++R +RDP I V E +T + Q + + +E+ KL+ L T
Sbjct: 256 SATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEK-KLDMLWSFIKTH 314
Query: 548 SIAQAVIFCNTRRR 507
++ ++F +T+++
Sbjct: 315 LNSRILVFLSTKKQ 328
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/59 (30%), Positives = 35/59 (59%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGI 352
F++ D +T + + + A+HGD Q ER+ ++ +F++G S ++ TD+ ARG+
Sbjct: 416 FVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGL 474
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILVQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDTLS 546
SAT P +V ++R F+RDP + ++ +L + I Q + E L L +
Sbjct: 350 SATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD 409
Query: 545 IAQAVIFCNTRR 510
++ +IF T+R
Sbjct: 410 GSKILIFVETKR 421
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = -3
Query: 534 CNFLQHPSQVD-WLTESMHLRDFTVSAMHGDMDQREREVIMRQFRT--GSSRVLITTDLL 364
CN L VD +L+E+ + HG++ +R +++F+ G L+ TDL
Sbjct: 377 CNTLNSSRAVDHYLSENQ----ISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLA 432
Query: 363 ARGIDVQQVSCVINYDLPSNRENYIH 286
ARG+D+ V V+ +D P N +Y+H
Sbjct: 433 ARGLDL-DVDHVVMFDFPKNSIDYLH 457
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 474 DFTVSAMHG--DMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNR 301
DF V G M +R E I+++F++ +L+ T + G+D+Q VI YDLP
Sbjct: 543 DFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETV 602
Query: 300 ENYI 289
++I
Sbjct: 603 TSFI 606
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -3
Query: 480 LRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 346
L+ + HG MDQ+ R+ + F SS VL+ TD+ ARG+D+
Sbjct: 264 LKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDI 308
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 489 SMHLRDFTVSAM--HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 316
S +LRD ++A H + ++R I F + RV++ T G+D V VI++
Sbjct: 503 SKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFS 562
Query: 315 LPSNRENYI 289
+P + E Y+
Sbjct: 563 VPGSMEEYV 571
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/68 (22%), Positives = 39/68 (57%)
Frame = -3
Query: 489 SMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 310
++ R + ++ D+ + R ++++F+ RVL+T +LL G++ + +++ +LP
Sbjct: 634 TIEARGMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELP 693
Query: 309 SNRENYIH 286
++ +Y H
Sbjct: 694 TDAVHYAH 701
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/65 (27%), Positives = 36/65 (55%)
Frame = -3
Query: 507 VDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCV 328
+D+L E+ D ++ HG ++ E M +F G ++LI T+++ G+D+Q + +
Sbjct: 497 MDFLEEAFP--DIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTI 554
Query: 327 INYDL 313
I D+
Sbjct: 555 IIQDV 559
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = -3
Query: 471 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 325
+ +HG M ++E + +FR+G +++L++T ++ G+DV S ++
Sbjct: 797 YNCGLLHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMV 845
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = -3
Query: 432 EREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYIH 286
ER I+ FR + V + TD ARG+DV VS VI D S+ +++H
Sbjct: 462 ERANILADFRE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLH 509
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 35.1 bits (77), Expect = 0.047
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = -3
Query: 477 RDFTVSAMHGDMDQREREVIMRQFRTG----SSRVLITTDLLARGIDVQQVSCVINYDLP 310
R V H + Q R M++F + +S L+ TD +RGID V V+ +D P
Sbjct: 663 RQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFP 722
Query: 309 SNRENYI 289
+ Y+
Sbjct: 723 RDPSEYV 729
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 35.1 bits (77), Expect = 0.047
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = -3
Query: 453 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 325
H + + +RE++ QFR G+ +VLI+T LA G+++ + +I
Sbjct: 811 HAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVII 853
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 34.3 bits (75), Expect = 0.083
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 438 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 316
Q+ ++ ++ +FR G V++ T + G+D+ +V VI +D
Sbjct: 513 QKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFD 553
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 366 LARGIDVQQVSCVINYDLPSNRENYIH 286
+ RGID ++V VIN+D+P + YIH
Sbjct: 396 VVRGIDFKKVHTVINFDMPQSVTGYIH 422
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = -1
Query: 722 SATMPDDVLEVSRCFMRDPVRILV----QKEELTLEGIKQFYIAIELEEWKLETLCDLYD 555
SAT DV ++ + + +P+ + + KEE ++QF+I+ ++ L L L
Sbjct: 238 SATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKL 297
Query: 554 TLSIAQAVIFCNT 516
+ + +IF NT
Sbjct: 298 EVVQKKILIFINT 310
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -3
Query: 447 DMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYI 289
+M + + + +FR G +L+ T + G+D++Q + V+ +DL YI
Sbjct: 706 EMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYI 758
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 408 FRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 292
F+ G +L TD++ G V SC++ +DLP +Y
Sbjct: 417 FQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSY 455
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 453 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 292
H + ++R + R+++TG R++ T GID V VI+ L E+Y
Sbjct: 459 HAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESY 512
>At5g01710.1 68418.m00088 expressed protein
Length = 513
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -3
Query: 531 NFLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGS 394
N +Q DWL +S+ RDF V M D++ E ++I R +TG+
Sbjct: 417 NLIQGFDFADWLKKSVRERDFVVMKM--DVEGTEFDLIPRLIKTGA 460
>At4g37020.1 68417.m05244 expressed protein
Length = 212
Score = 26.2 bits (55), Expect(2) = 0.83
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -3
Query: 396 SSRVLITTD----LLARGIDVQQVSCVINYDLPSNRENY 292
+S +++ TD LL+ G +INY+LP+ +E Y
Sbjct: 126 TSHLVVVTDVCLPLLSSGESSLSARVLINYELPTKKETY 164
Score = 23.4 bits (48), Expect(2) = 0.83
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = -3
Query: 468 TVSAMHGDMDQREREVIMRQFR 403
+++A++ D+ RER +++ +FR
Sbjct: 76 SLAALYSDLADRERAMVIEKFR 97
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 465 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 346
V+ H + ERE++ +R G RVL T LA G+++
Sbjct: 296 VAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNL 335
>At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 210
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/39 (30%), Positives = 28/39 (71%)
Frame = -3
Query: 465 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
++AM +MD ++ +MR+F+ S+++ +TT++++ ID
Sbjct: 109 MAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSID 147
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA repair
protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1132
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -3
Query: 456 MHGDMDQREREVIMRQFR---TGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 304
MHG ++QR+R+ ++ F +GS +L +T + GI + S V+ D+ N
Sbjct: 978 MHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWN 1031
>At5g04960.1 68418.m00525 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 564
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 332 QETCCTSIPRANKSVVIKTREEPVRNCLMITSRSR*SMS--PCIADTVKSRR 481
QETC ++ ANK + E ++N +TS + ++ IADTVK RR
Sbjct: 171 QETCMDALVEANKPSLTTFGENHLKNSTEMTSNALAIITWLGKIADTVKFRR 222
>At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 772
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 62 AQWVDLLINIAIERRTQNINRKNVGALDEVGHITGHFNDTSVV-EVLNILQCSPVS 226
++W + + + R + RKN L VG TG F + ++ +++ILQ +S
Sbjct: 676 SRWASIRLGTNMPARAERTMRKNDSELQLVGEPTGEFYEVVMIFGIIDILQDYDIS 731
>At5g16430.1 68418.m01920 hypothetical protein
Length = 85
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 555 YTVYCTSCNFLQHPSQVDW 499
Y YC+SC F +H +DW
Sbjct: 22 YGYYCSSCEFGEHLKCIDW 40
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = -3
Query: 528 FLQHPSQVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 349
FL ++V+W E +HG + E+ ++ + + G +V+ T++ +
Sbjct: 527 FLTSQAEVEWACERFVAPSAIALPLHGKLSFEEQFMVFQNY-PGRRKVIFATNIAETSLT 585
Query: 348 VQQVSCVIN 322
+ V VI+
Sbjct: 586 IPGVKYVID 594
>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 588
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 432 EREVIMRQFRTGSSRVLITTDLLARG 355
ER+ I R +R G R++ T L+A+G
Sbjct: 485 ERQAISRAYRIGQKRIVYTYHLVAKG 510
>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
plant glutamate receptor family, PMID:11379626
Length = 959
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 670 ILYAYLYRRKSLPWKVLNNFTLQLN*KNGSWKLCVTCMIHCLLHK 536
++ A + KS PW L FT+++ G + L V M+ L H+
Sbjct: 593 VVVAPVKEAKSSPWSFLKPFTIEMWAVTGGFFLFVGAMVWILEHR 637
>At1g01770.1 68414.m00096 expressed protein
Length = 632
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 62 AQWVDLLINIAIERRTQNINRKNVGALDEVG 154
++W+ LL+ +A+ER T I N+GA+D G
Sbjct: 86 SEWMQLLLPLAVERGTCIIT--NMGAIDPSG 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,550
Number of Sequences: 28952
Number of extensions: 322469
Number of successful extensions: 932
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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