Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00085
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    27   2.8  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.7  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   3.7  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    27   3.7  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   4.9  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    26   6.4  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    25   8.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.5  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 643 SKLFCIVFFIFCLNLFFYYL 584
           ++ FC++FF F   LF++Y+
Sbjct: 285 ARFFCLIFFPFLFFLFWFYM 304


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 438 LIDAYLKAVCKVHSELKAMRVKRA 509
           +ID++L+ + KVH E K +R++ A
Sbjct: 170 IIDSHLEKIAKVHWETKFIRIEAA 193


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 163 VKSKNAFMATAKDICSQITKLRDFLLEHRDNI 258
           + SKN   + ++++  QI+KL D L E+R+ +
Sbjct: 534 INSKNVQQSRSEELEQQISKLTDNLQEYRNTV 565


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 288 DMSDE--ERDQIDTGA-QRIMNTCSHLLKEFRNDNRRTTVTPQTREYMDSVVD 437
           +M DE  + +Q D+ + Q +MN    L KE RNDN      P  +E  + + D
Sbjct: 62  NMEDEANQYEQTDSSSDQEVMNEKQSLDKENRNDNIPHENNPGQQEINEPIFD 114


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +1

Query: 40  TNPLKMDITPLFKACIKTVKTRNKAFGIHSPISEDKQRILRVKSKNAFMATAK 198
           T PL + +  LF  C K +K         S  S    RIL +K K  + A  K
Sbjct: 208 TRPLNVSLEDLFTGCTKKMKISRHIIDA-SGQSVKADRILEIKVKPGWKAGTK 259


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -2

Query: 643 SKLFCIVFFIFCL-NLFFYYLI*CKRIRNTRFGRW--*LQSRQFPHI 512
           +KLF I+ FIFCL  LF   L      R  RF ++   LQ R+ P+I
Sbjct: 469 NKLFFILSFIFCLFFLFSLVLFGYDPKRRQRFKKFLLRLQRRKAPYI 515


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 97  KTRNKAFG-IHSPISEDKQRILRVKSKNAFMATAKDICSQITKLRDFLL 240
           K  NK  G +   I +  QR+  +   ++  A    +  Q TKLRDF L
Sbjct: 18  KIYNKGNGSVQQTILQASQRLNELTGYSSIEALKNAVVKQETKLRDFRL 66


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 288 DMSDEERDQIDTGAQRIMNTCSHLLKEFRNDNRRTTV---TPQTREYMD 425
           + +D  R  I +  +  M   ++LLK  +ND   +TV    P+ +E M+
Sbjct: 58  NFNDSNRSNISSSLRSEMEMSNNLLKNTQNDTWTSTVGLSVPENQEAMN 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,962
Number of Sequences: 5004
Number of extensions: 49422
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)