Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00085
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    29   5.1  
10_08_0977 - 21985149-21985277,21985348-21985722,21985824-219858...    28   8.9  

>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
            29048829-29049210,29049370-29049513,29049593-29049777,
            29049925-29050051,29050603-29050676,29051071-29051147,
            29051256-29051292,29051453-29051619,29051800-29051983,
            29052053-29052130,29052451-29052570,29052648-29052707,
            29053057-29053179,29053848-29053941,29054019-29054197,
            29054737-29055039,29055373-29055474,29055553-29055693,
            29055831-29055995,29056168-29056344,29056432-29056554,
            29057787-29057867,29057983-29058099,29058214-29058386,
            29058846-29058923,29058994-29059141,29059755-29059877,
            29060015-29060071,29060145-29060255,29060382-29060573,
            29060690-29060863,29061263-29061373,29061462-29061531,
            29061734-29061812,29061898-29062000,29062086-29062256,
            29062348-29062470,29062548-29062661,29062935-29063041,
            29063117-29063168,29063245-29063351,29063589-29063703,
            29063819-29063929,29064016-29064153,29064230-29064352,
            29064535-29064606,29064774-29064886,29066780-29067110,
            29067199-29067381,29068669-29068863,29068943-29069110,
            29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 131  GLCMPKALLRVLTVFMQALNNG 66
            GLC+PKAL   L +F Q L +G
Sbjct: 2160 GLCLPKALQPFLPIFQQGLISG 2181


>10_08_0977 -
           21985149-21985277,21985348-21985722,21985824-21985874,
           21985964-21986189,21986289-21986359,21986430-21986549,
           21986641-21986835,21986921-21986985,21987894-21987984,
           21988700-21988761,21988854-21988904,21989172-21989273,
           21989873-21989980,21990071-21990134,21990246-21990392
          Length = 618

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 300 EERDQIDTGAQRIMNTCSHLLKEFRNDNRRTTV 398
           +E  +  T    +   C H L+ FR D R+TTV
Sbjct: 451 QELKRFPTLQAELAAACFHALERFREDGRKTTV 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,587,607
Number of Sequences: 37544
Number of extensions: 267883
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)