Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00085
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81554-3|CAB04505.1|  255|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U41543-11|AAP40530.1|  362|Caenorhabditis elegans Hypothetical p...    28   7.9  
U41543-10|AAP40531.1|  374|Caenorhabditis elegans Hypothetical p...    28   7.9  
U41543-9|AAB37021.2|  453|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = -1

Query: 218 VICEQISLAVAMKAFFDFTLNMRCLSSLIGLCMPKALLRVLTVFMQALNNGVISILRGFV 39
           ++CEQ    + ++AF + +L +R  S  +   +P     +L   +  LNN  ++IL  F 
Sbjct: 110 IVCEQ---HLCVRAFLNISLVVRAFSLFLLASLPSNSKELLYSRITKLNNFSLTILT-FC 165

Query: 38  YVLNVFFLQ 12
              N FF Q
Sbjct: 166 PNFNTFFFQ 174


>Z81554-3|CAB04505.1|  255|Caenorhabditis elegans Hypothetical
           protein F57G4.6 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +3

Query: 294 SDEERDQIDTG-AQRIMNTCSHLLKEFRNDNRRTTVTPQTRE---YMDSVVDLIDAYLKA 461
           S  E+ + DT     IM TC  LLKE +   +R+ V  +  +   Y+   +++ID+ L  
Sbjct: 171 STYEKYKKDTAECDEIMLTCVSLLKELKEGEKRSEVKKKYEDVVGYVVETLEVIDSNLIP 230

Query: 462 VCKVHSELK 488
           + K H  LK
Sbjct: 231 LLK-HDILK 238


>U41543-11|AAP40530.1|  362|Caenorhabditis elegans Hypothetical
           protein F46H5.2b protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 261 SFFNNVTGDDMSDEERDQIDTGAQRIMNTCSHLLKEFRNDNRRTTVTPQTRE 416
           SF  NV   D  +  R  +D     + +T S  +K+FR +N+R T    + E
Sbjct: 8   SFSTNVP--DSENSSRSSVD--GYNLKDTTSEKIKQFRENNKRKTSNSSSEE 55


>U41543-10|AAP40531.1|  374|Caenorhabditis elegans Hypothetical
           protein F46H5.2c protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 261 SFFNNVTGDDMSDEERDQIDTGAQRIMNTCSHLLKEFRNDNRRTTVTPQTRE 416
           SF  NV   D  +  R  +D     + +T S  +K+FR +N+R T    + E
Sbjct: 99  SFSTNVP--DSENSSRSSVD--GYNLKDTTSEKIKQFRENNKRKTSNSSSEE 146


>U41543-9|AAB37021.2|  453|Caenorhabditis elegans Hypothetical
           protein F46H5.2a protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 261 SFFNNVTGDDMSDEERDQIDTGAQRIMNTCSHLLKEFRNDNRRTTVTPQTRE 416
           SF  NV   D  +  R  +D     + +T S  +K+FR +N+R T    + E
Sbjct: 99  SFSTNVP--DSENSSRSSVD--GYNLKDTTSEKIKQFRENNKRKTSNSSSEE 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,370,364
Number of Sequences: 27780
Number of extensions: 268052
Number of successful extensions: 767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)