Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00085
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -1

Query: 173 FDFTLNMRCLSSLIGL---CMPKALLRVLTVFMQALNNGVISILRGFVYVLNVFFL 15
           F+ T+  + L   + +   CM  + L VLT ++ + +   +++    +  L+VFFL
Sbjct: 236 FNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFL 291


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -1

Query: 173 FDFTLNMRCLSSLIGL---CMPKALLRVLTVFMQALNNGVISILRGFVYVLNVFFL 15
           F+ T+  + L   + +   CM  + L VLT ++ + +   +++    +  L+VFFL
Sbjct: 236 FNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFL 291


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 173 FDFTLNMRCLSSLIGL---CMPKALLRVLTVFMQALNNGVISILRGFVYVLNVFFL 15
           F+ T+  + L   + L   CM  + L VL  ++ + +   +S+    +  L VFFL
Sbjct: 232 FNITMRRKTLFYTVNLIIPCMGISFLTVLVFYLPSDSGEKVSLSISILLSLTVFFL 287


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 210 TNYQA*RLLIGTPR*YLSFFNNVTGDDMSDE-ERDQIDTGAQR 335
           T YQ    L+  P+  L +    +GDD+S E + D  D   ++
Sbjct: 169 TGYQQYLRLLEVPQINLEWGEGSSGDDLSSEWDSDYTDKSNEK 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,819
Number of Sequences: 438
Number of extensions: 3041
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)