Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00085
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64790.1 68414.m07346 translational activator family protein ...    29   2.4  
At2g25660.1 68415.m03075 expressed protein                             29   3.2  
At1g61620.1 68414.m06943 expressed protein contains Pfam profile...    28   5.6  

>At1g64790.1 68414.m07346 translational activator family protein
            similar to HsGCN1 [Homo sapiens] GI:2282576
          Length = 2440

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 131  GLCMPKALLRVLTVFMQALNNG 66
            GLC+PK+L  +L VF+Q L +G
Sbjct: 2032 GLCLPKSLKPLLPVFLQGLISG 2053


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 133  ISEDKQRILRVKSKNAFMATAKDICSQITKLRDFLLEHRDNI*ASSIMLLETICL 297
            +S      +  +SK+ F+ + +++C Q   LRD L E R      S ++LE + L
Sbjct: 1336 LSRSTDPAVHSRSKDLFIQSVQNLCLQAENLRDLLEEIRGYYTPPSEVVLEDLSL 1390


>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
           PF01363 FYVE zinc finger
          Length = 310

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 466 QTAFK*ASIKSTTESIYSLVCGVTVVLRLSFLNSFSRCEHVFMMRCA 326
           +T  K AS  S  +S     C VT+   +S + + S C HVF  +CA
Sbjct: 204 ETKTKSASSSSYDKSYICPSCKVTLTNTMSLV-ALSSCGHVFCKKCA 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,296,129
Number of Sequences: 28952
Number of extensions: 239432
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)