Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00084
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   8.5  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   8.5  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   8.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   8.5  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   8.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   8.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   8.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   8.5  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 89  LETTTPDPPPKPYVFSY 139
           +E   P PPP P V S+
Sbjct: 726 MENNAPPPPPPPRVESF 742


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 380  AILEYSWKCLSLAKATDS 327
            AIL +SW C      +DS
Sbjct: 1035 AILAFSWACNDAVMTSDS 1052


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 204 TPLPSLTSVCSLSTCPGNRPA 142
           T    LTS  S+ST P  +PA
Sbjct: 138 TKSSGLTSPLSVSTSPPGKPA 158


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 204 TPLPSLTSVCSLSTCPGNRPA 142
           T    LTS  S+ST P  +PA
Sbjct: 138 TKSSGLTSPLSVSTSPPGKPA 158


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 204 TPLPSLTSVCSLSTCPGNRPA 142
           T    LTS  S+ST P  +PA
Sbjct: 138 TKSSGLTSPLSVSTSPPGKPA 158


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 204 TPLPSLTSVCSLSTCPGNRPA 142
           T    LTS  S+ST P  +PA
Sbjct: 138 TKSSGLTSPLSVSTSPPGKPA 158


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 204 TPLPSLTSVCSLSTCPGNRPA 142
           T    LTS  S+ST P  +PA
Sbjct: 138 TKSSGLTSPLSVSTSPPGKPA 158


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 204 TPLPSLTSVCSLSTCPGNRPA 142
           T    LTS  S+ST P  +PA
Sbjct: 94  TKSSGLTSPLSVSTSPPGKPA 114


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 204 TPLPSLTSVCSLSTCPGNRPA 142
           T    LTS  S+ST P  +PA
Sbjct: 138 TKSSGLTSPLSVSTSPPGKPA 158


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 204 TPLPSLTSVCSLSTCPGNRPA 142
           T    LTS  S+ST P  +PA
Sbjct: 138 TKSSGLTSPLSVSTSPPGKPA 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,143
Number of Sequences: 336
Number of extensions: 2648
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)