Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00084
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 27 1.7
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.2
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 26 5.2
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 26 5.2
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 5.2
SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 6.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.0
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +2
Query: 65 LTSCDVSHLETTTPDPPPKPYV---FSYTAGRFPGHVDREHTE 184
L S V L +PDPP P + S P HV R++T+
Sbjct: 444 LPSASVPALGDGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQ 486
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 50 VLAAGLTSCDVSHLETTTPDPPPKPYVFSYTAGRFPGHVD--REHTEVSDGSG 202
V+ AG S +SH + T P + + F Y A R+ + REH + D G
Sbjct: 107 VIEAGTGSASMSHAISRTVGPLGRLFTFEYHATRYQTALQEFREHEMLIDVGG 159
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 292 LSDVPPEHP--ADSESVALAKDRHFQLYSKIAEEHAQHPHP 408
L + EH AD ES+ +A+D + + +AEE+ + P
Sbjct: 2561 LQQLSAEHNRHADLESMVMARDDYINVQQPLAEENQEEGSP 2601
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 314 TRLTLNP*PWLKTGTSSYTPRLLKSTPNIHILMKPAFLVNQPPSPKP 454
T LNP P T+ P + +P+I + +PA V PP +P
Sbjct: 547 TSQQLNPAP-----TAMPHPNITSPSPSISVTQRPAVNVGPPPYVRP 588
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 361 QLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSEL 474
+L+ + A A+HP Y+T V SA AE+T H L
Sbjct: 176 RLFIQSAHNIAKHPSLYDTEVRNPSA--AESTNSHVSL 211
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 535 RKKRNNTCRNLNSRPIREDPKNFS 606
++K N R N+RP++ED N S
Sbjct: 209 KRKHENINRGTNARPLKEDRANTS 232
>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +1
Query: 412 ETSVPRQSAAVAEATLKHSELFRVIAEQHARIGRRERLS*GRKKRNNTCRNLNSRP 579
+ V ++ + +T + + +F A+ H R S +KKR C N+N P
Sbjct: 39 QVQVAKELEQESSSTFRFAYVFPRKAQNHYYSPSRTHTSSIKKKRPKLCSNINLTP 94
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 TSRRPRLTLHR-SPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTS 230
T P +HR SP SP+ L D EN+ +++ ++ +E+ T+
Sbjct: 1126 TQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTN 1174
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 TSRRPRLTLHR-SPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTS 230
T P +HR SP SP+ L D EN+ +++ ++ +E+ T+
Sbjct: 1126 TQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTN 1174
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 TSRRPRLTLHR-SPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTS 230
T P +HR SP SP+ L D EN+ +++ ++ +E+ T+
Sbjct: 1126 TQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTN 1174
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 TSRRPRLTLHR-SPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTS 230
T P +HR SP SP+ L D EN+ +++ ++ +E+ T+
Sbjct: 1126 TQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTN 1174
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 TSRRPRLTLHR-SPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTS 230
T P +HR SP SP+ L D EN+ +++ ++ +E+ T+
Sbjct: 1126 TQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTN 1174
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 TSRRPRLTLHR-SPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTS 230
T P +HR SP SP+ L D EN+ +++ ++ +E+ T+
Sbjct: 1126 TQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTN 1174
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 TSRRPRLTLHR-SPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTS 230
T P +HR SP SP+ L D EN+ +++ ++ +E+ T+
Sbjct: 1126 TQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTN 1174
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 TSRRPRLTLHR-SPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTS 230
T P +HR SP SP+ L D EN+ +++ ++ +E+ T+
Sbjct: 1126 TQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTN 1174
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 TSRRPRLTLHR-SPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTS 230
T P +HR SP SP+ L D EN+ +++ ++ +E+ T+
Sbjct: 1126 TQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTN 1174
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 TSRRPRLTLHR-SPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTS 230
T P +HR SP SP+ L D EN+ +++ ++ +E+ T+
Sbjct: 1126 TQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTN 1174
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 TSRRPRLTLHR-SPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTS 230
T P +HR SP SP+ L D EN+ +++ ++ +E+ T+
Sbjct: 1126 TQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVKEHLNTN 1174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,080
Number of Sequences: 5004
Number of extensions: 43039
Number of successful extensions: 153
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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