Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00084
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41)               29   3.1  
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)                    29   3.1  
SB_32940| Best HMM Match : EGF (HMM E-Value=0)                         29   3.1  
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)           28   5.4  
SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32)                  28   7.2  
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                28   7.2  
SB_29290| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 307 EARRSVSDGSLPCQPRSPCPNLVTWVDVREF 215
           +  +SV+ GS+ C  RSP  N+  W+++  +
Sbjct: 651 DGSKSVAYGSVACTSRSPVYNISKWMNIHSY 681


>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 329  NP*PWLKTGTSSYTPRLLKSTPNIHILMKPAFLVNQPPSPKP 454
            +P P +   T  +  + L +TPNI    KP+     PPSP P
Sbjct: 1488 SPNPVITNNTHHHQTQSLTTTPNI---TKPSHYQQHPPSPNP 1526


>SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41)
          Length = 367

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 68  TSCDVSHLETTT-PDPPPKPYVFSYTAGRFPGH 163
           TS   + L TT  P PPP  Y+++  +GR PG+
Sbjct: 200 TSAPPTTLATTAVPSPPPGFYLYTEASGRKPGN 232


>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
          Length = 984

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 340 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRV 483
           LAKD  +   +  AEEHAQ    ++    R + AV  ++LK +++ RV
Sbjct: 125 LAKDDRYSTRTP-AEEHAQGGSIFDAYAGRGACAVVRSSLKTTDIRRV 171



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 340 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRV 483
           LAKD  +  ++ +AEEHAQ    ++    R + +V  ++LK  ++ RV
Sbjct: 405 LAKDDRYSTHT-LAEEHAQLRSKFDAYSGRGACSVVRSSLKTIDIRRV 451



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 340 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRVIAEQHAR 504
           LAKD  +   +  AEEHAQ    ++    R + AV + +LK  ++ RV  ++  R
Sbjct: 768 LAKDDRYSTRTP-AEEHAQLRSIFDVYAGRGACAVVQISLKMIDIRRVRRQRSMR 821


>SB_32940| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1025

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +1

Query: 391  AQHPHPYETSVPRQSAAVAEAT--LKHSELFRVIAEQHARIGRRERLS*GRKKRNNTCRN 564
            A H HP    VPR+   + E T  + H   FR + E   R    + +   ++K  N  + 
Sbjct: 824  ANHGHPQSNIVPREKLPLLEITDDMPHWLKFRRVVENEKRKKMNKEIDQQKEKEQNKYKG 883

Query: 565  LNS 573
            + S
Sbjct: 884  VPS 886


>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 113 PPKPYVFSYTAG-RFPGHVDREHTEVSDGSGVVRGK 217
           P KP   +YT G ++ G++     EVSD S   RGK
Sbjct: 33  PEKPQYINYTPGHQYSGYMYGAEYEVSDRSPFTRGK 68


>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
          Length = 291

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 222 ANFPLTTPLPSLTSVCSLSTCPGN 151
           AN    T LPSL   CS  TCPG+
Sbjct: 187 ANNLNNTKLPSLCGACSNPTCPGD 210


>SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -2

Query: 376 SWSIAGSACL*PRLRIQSQPGALEARRSVSDGSLPCQPRSPCPNLVTWVDVREFSSHDSA 197
           SW + G ACL   +R + QP  L+ +R  S  SL  + R     + T V     + H ++
Sbjct: 31  SWILVGLACLLQEVRRKPQP--LKDKRIYSRSSLSDRSRKRPAPITTTVTNHRLNCHTNS 88

Query: 196 AV 191
            +
Sbjct: 89  VI 90


>SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32)
          Length = 808

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -1

Query: 452 ASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGWK 279
           +SA  A  R T+ +    C++ + A +  + KC S+ +AT + +  C G T  ++  K
Sbjct: 502 SSARTAMTRATVAT-NTKCYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVATK 558


>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 543

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 241 QGSDRDYVADKEGFHPILSDVPPEHPADSESVAL 342
           Q  D      K+  HP+ S+ PPE P+DS   AL
Sbjct: 17  QLQDMQEAHGKQASHPVSSE-PPEEPSDSTKKAL 49


>SB_29290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +1

Query: 376 IAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRVIAEQHARIGRRERLS*GRKKRNNT 555
           IAEE   H HPY +    Q        LK +  F+V   ++   G RE +   ++++   
Sbjct: 65  IAEE--PHKHPYASKERGQKWDKIALNLKENHGFKVTQRRYEEEGNRE-IKCNQEEKREW 121

Query: 556 CRNLNSRPIRE 588
            R    RP +E
Sbjct: 122 RRQGRRRPAKE 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,994,102
Number of Sequences: 59808
Number of extensions: 367044
Number of successful extensions: 1437
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)