Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00084
(629 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL834382-1|CAD39045.1| 505|Homo sapiens hypothetical protein pr... 32 1.5
BC039600-1|AAH39600.1| 1049|Homo sapiens hect domain and RLD 4 p... 31 3.4
AY650033-1|AAV66579.1| 979|Homo sapiens HECT and RCC1 containin... 31 3.4
AY221963-1|AAO65480.1| 1057|Homo sapiens HECT and RCC1 containin... 31 3.4
AL356741-3|CAH74148.1| 1049|Homo sapiens hect domain and RLD 4 p... 31 3.4
AL356741-1|CAH74146.1| 907|Homo sapiens hect domain and RLD 4 p... 31 3.4
AL133551-3|CAI16032.1| 1049|Homo sapiens hect domain and RLD 4 p... 31 3.4
AL133551-1|CAI16031.1| 907|Homo sapiens hect domain and RLD 4 p... 31 3.4
AB046813-1|BAB13419.1| 953|Homo sapiens KIAA1593 protein protein. 31 3.4
X96753-1|CAA65529.1| 2322|Homo sapiens melanoma-associated chond... 31 4.5
AY359468-1|AAQ62842.1| 2322|Homo sapiens melanoma chondroitin su... 31 4.5
>AL834382-1|CAD39045.1| 505|Homo sapiens hypothetical protein
protein.
Length = 505
Score = 32.3 bits (70), Expect = 1.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 389 CSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGW 282
C+S +L+ +W+C S T + SA CSG T + W
Sbjct: 332 CTSRMLKLTWRCASCRTFTPTFSA-CSGATVYAASW 366
>BC039600-1|AAH39600.1| 1049|Homo sapiens hect domain and RLD 4
protein.
Length = 1049
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 134 SYTAGRFPGHVDREHTEVSDGSGVVRGKFAYVDPRHKVRTGT 259
SY +GRFP + E SG + G F V RTGT
Sbjct: 412 SYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGT 453
>AY650033-1|AAV66579.1| 979|Homo sapiens HECT and RCC1 containing
protein 4 isoform 3 protein.
Length = 979
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 134 SYTAGRFPGHVDREHTEVSDGSGVVRGKFAYVDPRHKVRTGT 259
SY +GRFP + E SG + G F V RTGT
Sbjct: 412 SYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGT 453
>AY221963-1|AAO65480.1| 1057|Homo sapiens HECT and RCC1 containing
protein 4 isoform 1 protein.
Length = 1057
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 134 SYTAGRFPGHVDREHTEVSDGSGVVRGKFAYVDPRHKVRTGT 259
SY +GRFP + E SG + G F V RTGT
Sbjct: 412 SYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGT 453
>AL356741-3|CAH74148.1| 1049|Homo sapiens hect domain and RLD 4
protein.
Length = 1049
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 134 SYTAGRFPGHVDREHTEVSDGSGVVRGKFAYVDPRHKVRTGT 259
SY +GRFP + E SG + G F V RTGT
Sbjct: 412 SYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGT 453
>AL356741-1|CAH74146.1| 907|Homo sapiens hect domain and RLD 4
protein.
Length = 907
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 134 SYTAGRFPGHVDREHTEVSDGSGVVRGKFAYVDPRHKVRTGT 259
SY +GRFP + E SG + G F V RTGT
Sbjct: 262 SYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGT 303
>AL133551-3|CAI16032.1| 1049|Homo sapiens hect domain and RLD 4
protein.
Length = 1049
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 134 SYTAGRFPGHVDREHTEVSDGSGVVRGKFAYVDPRHKVRTGT 259
SY +GRFP + E SG + G F V RTGT
Sbjct: 412 SYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGT 453
>AL133551-1|CAI16031.1| 907|Homo sapiens hect domain and RLD 4
protein.
Length = 907
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 134 SYTAGRFPGHVDREHTEVSDGSGVVRGKFAYVDPRHKVRTGT 259
SY +GRFP + E SG + G F V RTGT
Sbjct: 262 SYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGT 303
>AB046813-1|BAB13419.1| 953|Homo sapiens KIAA1593 protein protein.
Length = 953
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 134 SYTAGRFPGHVDREHTEVSDGSGVVRGKFAYVDPRHKVRTGT 259
SY +GRFP + E SG + G F V RTGT
Sbjct: 308 SYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGT 349
>X96753-1|CAA65529.1| 2322|Homo sapiens melanoma-associated
chondroitin sulfate proteoglycan (MCSP) protein.
Length = 2322
Score = 30.7 bits (66), Expect = 4.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 83 SHLETTTPDPPPKPYVFSYTAGRFP--GHVDREHTEVSDGSG 202
+HLE T + P P F Y + P G++ + T +SDG G
Sbjct: 805 AHLEATLEEAGPSPPTFHYEVVQAPRKGNLQLQGTRLSDGQG 846
>AY359468-1|AAQ62842.1| 2322|Homo sapiens melanoma chondroitin
sulfate proteoglycan protein.
Length = 2322
Score = 30.7 bits (66), Expect = 4.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 83 SHLETTTPDPPPKPYVFSYTAGRFP--GHVDREHTEVSDGSG 202
+HLE T + P P F Y + P G++ + T +SDG G
Sbjct: 805 AHLEATLEEAGPSPPTFHYEVVQAPRKGNLQLQGTRLSDGQG 846
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,159,250
Number of Sequences: 237096
Number of extensions: 1735843
Number of successful extensions: 9817
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9803
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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