Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00084
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCH...    28   4.4  
At2g35530.1 68415.m04352 bZIP transcription factor family protei...    25   5.2  
At4g24290.2 68417.m03488 expressed protein                             28   5.9  
At2g48160.1 68415.m06031 PWWP domain-containing protein                28   5.9  

>At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCHEL)
           99.4% identical to WUSCHELL (GI:4090200) [Arabidopsis
           thaliana]
          Length = 292

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 262 VADKEGFHPILSD---VPPEHPADSESVALAKDRHFQLYSK 375
           +A  + +HP+L     VP + PA+S +V L +D H   ++K
Sbjct: 118 MAANDHYHPLLHHHHGVPMQRPANSVNVKLNQDHHLYHHNK 158


>At2g35530.1 68415.m04352 bZIP transcription factor family protein
           contains Pfam domain PF00170: bZIP transcription factor;
           similar to G-Box binding protein 2 (GI:5381313)
           [Catharanthus roseus].
          Length = 409

 Score = 25.4 bits (53), Expect(2) = 5.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 53  LAAGLTSCDVSHLETTTPDPPPKPYVFS 136
           ++AG+ + D S  +  +P PPP  YV S
Sbjct: 35  VSAGMATPDWSGFQAYSPMPPPHGYVAS 62



 Score = 21.0 bits (42), Expect(2) = 5.2
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 113 PPKPYVFSYTAGRFPGH 163
           PP PYV  Y  G    H
Sbjct: 83  PPHPYVAMYPPGGMYAH 99


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 59  AGLTSCDVSHLETTTPDPPPKPYVFSYTAGRFPG 160
           +GL S  +SH  T    PPP+P   +  +  +PG
Sbjct: 504 SGLISTLISHHFTAAQKPPPRPADVNINSAIYPG 537


>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 83   SHLETTTPDPPPKP-YVFSYTAGRFPGHVDREHTE 184
            SH     P PPP P + FS+   R PGHV + H +
Sbjct: 1230 SHPHPHPPPPPPPPQHQFSF---REPGHVLKSHRD 1261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,274,677
Number of Sequences: 28952
Number of extensions: 250245
Number of successful extensions: 1083
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)