Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00083
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    27   2.9  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    27   2.9  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    26   5.0  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   8.8  

>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 314 LLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPLTCYF 442
           LL+P  ++R  S G LRN  + ++D   + + ++I   +   F
Sbjct: 25  LLNPVIAIRQLSHGSLRNSRSCRIDAKSNTLTKEIFPKINNEF 67


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 314 LLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPLTCYFH 445
           L+D  S ++ A S +LRN  A+   +CD L   +   PLT   H
Sbjct: 134 LIDNHSCIQTAVSHLLRNHQALFKYLCDYLRSGEF--PLTVLIH 175


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +1

Query: 55  LQAKWVRFEKLRLVKSKTLWLAKRAMKKSNFQMIAKRMRFKR 180
           +Q  W + ++ +    K + +AKRA  ++N + +A+ M F++
Sbjct: 34  IQTTWAKAKEAQRFAEKLITMAKRANPQNNRKGLAEGMVFEK 75


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +2

Query: 290 LVKVAAPLLLDPASSVRN 343
           L+K+ +PL+LD +SSVR+
Sbjct: 99  LLKLTSPLILDESSSVRD 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,275
Number of Sequences: 5004
Number of extensions: 58022
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)