Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00083
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0147 + 17690840-17691687,17692328-17692532,17693048-176931...    36   0.046
02_01_0070 + 495570-495647,495692-496075                               29   3.0  
07_03_1169 + 24501594-24502826                                         29   5.2  
01_05_0162 + 18759647-18759663,18760128-18760131,18760270-187606...    29   5.2  
04_01_0625 - 8222105-8222462,8222574-8222926,8223029-8223204,822...    28   6.9  
03_04_0184 - 18210875-18212065                                         28   6.9  
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053...    28   6.9  
04_01_0624 - 8202783-8203140,8203242-8203594,8203697-8203872,820...    28   9.2  

>03_04_0147 +
           17690840-17691687,17692328-17692532,17693048-17693199,
           17693306-17693597,17693807-17693962,17694561-17694764,
           17694875-17694987,17695078-17695192,17695293-17695382,
           17695463-17695666,17695764-17695859,17696094-17696216,
           17696308-17696400,17696477-17696641,17697179-17697268,
           17697356-17697520
          Length = 1036

 Score = 35.5 bits (78), Expect = 0.046
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = +2

Query: 251 RVPENIDEVINQGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKLDICDSLMDQ 412
           +V E I EVIN+   +  + + +DP   +++ASSGM  NLSAV L +C+  +D+
Sbjct: 332 KVLEFIAEVINKNAGR--SRMQVDP---LKSASSGMFVNLSAVMLRLCEPFLDR 380


>02_01_0070 + 495570-495647,495692-496075
          Length = 153

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 683 LSSTTTNRHCSTAATMSIPNNDISKYLGSISSILD*PTYLTA 558
           L+ +T  RH   AA  S  N+D S  L ++SS  D   YL A
Sbjct: 72  LARSTAARHVHLAAPSSFDNDDDSGRLAALSSFDDNDRYLVA 113


>07_03_1169 + 24501594-24502826
          Length = 410

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 293 VKVAAPLLLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMT 424
           V +AAP L +  S  R A++GMLRN+ A  +  C +L    + T
Sbjct: 113 VALAAPHLAEARS--REANAGMLRNVLAAVVPTCPALAHVALQT 154


>01_05_0162 +
           18759647-18759663,18760128-18760131,18760270-18760617,
           18760801-18761016,18763367-18763435,18763560-18764209,
           18764993-18765089,18765170-18765223,18765305-18765435,
           18766818-18767008,18767937-18768574
          Length = 804

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 266 IDEVIN-QGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKL 385
           IDE++   G V +   LL   +     A++G+LRN+++VKL
Sbjct: 57  IDEIMQFHGCVALIVSLLRSDSVRACEAAAGLLRNITSVKL 97


>04_01_0625 -
           8222105-8222462,8222574-8222926,8223029-8223204,
           8223318-8223555,8226983-8227423
          Length = 521

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 416 IMTPLTCYFHEHAESWIPDPISKSRDEDIDTLFNVLICC*ICV 544
           ++TPL   F + AES+   P+ K       +LF  LI C I +
Sbjct: 281 LLTPLRWIFSKFAESYYSIPMKKYGMVPDHSLFEALITCLIAI 323


>03_04_0184 - 18210875-18212065
          Length = 396

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 383 LDICDSLMDQDIMTPLTCYFHEHAESWIPDPI-SKSRDEDIDTLFNVL 523
           LD+ DS    +++TPLT   H    +W   P  +++R+ +   L N+L
Sbjct: 84  LDLADSAAVAEVLTPLTDITHVFYVAWSAHPTEAQNREVNSAMLRNIL 131


>02_05_1074 -
           33904518-33904697,33904886-33904985,33905085-33905311,
           33905511-33908384,33908467-33908643,33908786-33909008,
           33909727-33909806,33910657-33910817,33910892-33910937,
           33911129-33911251,33911730-33911804,33911920-33912120
          Length = 1488

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/80 (27%), Positives = 38/80 (47%)
 Frame = +2

Query: 284 QGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPLTCYFHEHAESW 463
           +G+V +A+ L     S +R+     LR  S + L IC + +D D    L      +  + 
Sbjct: 535 EGMVLLASLL----CSCIRSVKKPELRRASLILLKICSTYIDDDSRLQLVI---PYVIAM 587

Query: 464 IPDPISKSRDEDIDTLFNVL 523
           + DP +  R   ++TL +VL
Sbjct: 588 LSDPAAIVRCAALETLSDVL 607


>04_01_0624 -
           8202783-8203140,8203242-8203594,8203697-8203872,
           8203993-8204230,8208308-8208748
          Length = 521

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 416 IMTPLTCYFHEHAESWIPDPISKSRDEDIDTLFNVLICC*ICV 544
           ++TPL   F + AES+   P+ K       +LF  LI C + +
Sbjct: 281 LLTPLRWIFSKFAESYYSIPMKKYDMVPDHSLFEALITCLVAI 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,250
Number of Sequences: 37544
Number of extensions: 326940
Number of successful extensions: 845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)