Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00083
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22229| Best HMM Match : Arm (HMM E-Value=0)                         36   0.047
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 30   1.8  
SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)             29   3.1  
SB_46995| Best HMM Match : KIP1 (HMM E-Value=3.1)                      29   5.4  
SB_5547| Best HMM Match : Rho_N (HMM E-Value=0.0017)                   29   5.4  
SB_36784| Best HMM Match : Rho_N (HMM E-Value=0.0017)                  28   7.1  
SB_17975| Best HMM Match : Rho_N (HMM E-Value=0.0017)                  28   9.4  

>SB_22229| Best HMM Match : Arm (HMM E-Value=0)
          Length = 1050

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 16/58 (27%), Positives = 34/58 (58%)
 Frame = +2

Query: 257 PENIDEVINQGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPL 430
           P+NI+ + N G++ +  PLLLD   +++  ++  L  L+    D+ ++++  DI+  L
Sbjct: 29  PQNIETLQNAGVMSLLRPLLLDIVPTIQQTAALALGRLANYNDDLAEAVVKADILPQL 86


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = -1

Query: 297  FTRPWFITSSIFSGTL*---TLPKFANRNTSLQHLLPAT---DLISFEPHSLC 157
            FT P   T+   SG L    TL  + NR+T + HL  +T   DL+ +  H++C
Sbjct: 1829 FTTPRVYTAQFSSGYLILAGTLHHYTNRSTCIDHLGSSTSIHDLLRYRCHTIC 1881


>SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)
          Length = 466

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 294 TRPWFITSSIFSG--TL*TLPKFANRNTSLQHLLPATDLISF 175
           TR WFI  ++FSG  TL  L + A    +L  +L  T +I F
Sbjct: 230 TRFWFIVETVFSGWFTLEYLMRLATAPNTLHFVLSFTAIIDF 271


>SB_46995| Best HMM Match : KIP1 (HMM E-Value=3.1)
          Length = 308

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 386 DICDSLMDQDIMTPLTCYFHEHAESWIPDPISKSRDEDID 505
           +I D+    D +      FH+H E W+  P+ K   E+I+
Sbjct: 90  EIIDAKEPFDKLWRAVVRFHDHQEGWLSGPLLKLNAEEIE 129


>SB_5547| Best HMM Match : Rho_N (HMM E-Value=0.0017)
          Length = 493

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +2

Query: 254 VPENIDE-VINQGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPL 430
           +P N  E V+++ + ++  P+L  P+   RN+    L++ +   +D   S +D+      
Sbjct: 64  IPSNTSERVLDEPVPEINVPIL-KPSQPTRNSHVRPLKHFANRAVDSIKSELDK------ 116

Query: 431 TCYFHEHAESWIPDPISKSRDEDIDTL 511
              F +   S++P+PI K+ D+ +  L
Sbjct: 117 ---FADWVLSYVPEPIKKTVDKRVKRL 140


>SB_36784| Best HMM Match : Rho_N (HMM E-Value=0.0017)
          Length = 456

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +2

Query: 254 VPENIDE-VINQGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPL 430
           +P N  E V+++ + ++  P+L  P+   RN+    L++ +   +D   S +D+      
Sbjct: 64  IPSNTSERVLDEPIPEINFPIL-KPSQPTRNSHVRPLKHFANRAVDSIKSELDK------ 116

Query: 431 TCYFHEHAESWIPDPISKSRDEDIDTL 511
              F +   S++P+PI K+ D+ +  L
Sbjct: 117 ---FADWVLSYVPEPIKKTVDKRVKRL 140


>SB_17975| Best HMM Match : Rho_N (HMM E-Value=0.0017)
          Length = 1064

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +2

Query: 254 VPENIDE-VINQGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPL 430
           +P N  E V+++ + ++  P+L  P+   RN+    L++ +   +D   S +D+      
Sbjct: 64  IPSNTSERVLDEPIPEINFPIL-KPSQPTRNSHVRPLKHFANRAVDSIKSELDK------ 116

Query: 431 TCYFHEHAESWIPDPISKSRDEDIDTL 511
              F +   S++P+P+ K+ D+ +  L
Sbjct: 117 ---FADWVLSYVPEPVKKTVDKRVKRL 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,711,737
Number of Sequences: 59808
Number of extensions: 408937
Number of successful extensions: 1022
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)