Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00083
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   5.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   7.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   7.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.4  

>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 304 SNFYKTLVYNFINI 263
           +N YK L YN INI
Sbjct: 328 NNNYKPLYYNIINI 341


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 662 CLLLLKTIHLQWKKIKSNCQKQL 730
           CL+ L  +   WK +  N ++ L
Sbjct: 8   CLMALSIVDAAWKPLPENLKEDL 30


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 301 NFYKTLVYNFINI 263
           N YK L YN INI
Sbjct: 347 NNYKKLYYNIINI 359


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 330 LAGSSNKGAATFTRPWFITSSIFSGT 253
           LAG+S   AAT T P     S  +GT
Sbjct: 41  LAGTSTTAAATPTPPSVPVGSAVAGT 66


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 662 CLLLLKTIHLQWKKIKSNCQKQL 730
           CL+ L  +   WK +  N ++ L
Sbjct: 8   CLMALSIVDAAWKPLPENLKEDL 30


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 307 SSNFYKTLVYNFINI 263
           ++N+ K L YN INI
Sbjct: 105 NNNYNKKLYYNIINI 119


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 307 SSNFYKTLVYNFINI 263
           ++N+ K L YN INI
Sbjct: 105 NNNYNKKLYYNIINI 119


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 307 SSNFYKTLVYNFINI 263
           ++N+ K L YN INI
Sbjct: 325 NNNYNKKLYYNIINI 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,898
Number of Sequences: 438
Number of extensions: 3658
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)