Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00083
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15400.1 68418.m01802 U-box domain-containing protein contain... 35 0.067
At1g02690.2 68414.m00220 importin alpha-2 subunit, putative simi... 32 0.47
At1g02690.1 68414.m00219 importin alpha-2 subunit, putative simi... 32 0.47
At4g02150.1 68417.m00287 importin alpha-2 subunit identical to i... 31 0.62
At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic... 28 5.8
At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic... 28 5.8
At2g17230.1 68415.m01990 phosphate-responsive 1 family protein s... 28 7.7
At1g77950.1 68414.m09084 MADS-box family protein similar to MADS... 28 7.7
>At5g15400.1 68418.m01802 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 1038
Score = 34.7 bits (76), Expect = 0.067
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +2
Query: 251 RVPENIDEVINQGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKLDICDSLMD 409
RV + + EVIN + A + +DP S ASSGM NLSAV L +C+ +D
Sbjct: 336 RVLQFLAEVINANASR--AHIQVDPVSC---ASSGMFVNLSAVMLRLCEPFLD 383
>At1g02690.2 68414.m00220 importin alpha-2 subunit, putative similar
to importin alpha-2 subunit (Karyopherin alpha-2
subunit) (KAP alpha) SP:O04294 from [Arabidopsis
thaliana]
Length = 539
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 260 ENIDEVINQGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPLTCY 439
EN +I+ G V + LL + VR + L N++ D ++ + M L
Sbjct: 153 ENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQ 212
Query: 440 FHEHAE 457
FHEH++
Sbjct: 213 FHEHSK 218
>At1g02690.1 68414.m00219 importin alpha-2 subunit, putative similar
to importin alpha-2 subunit (Karyopherin alpha-2
subunit) (KAP alpha) SP:O04294 from [Arabidopsis
thaliana]
Length = 538
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 260 ENIDEVINQGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPLTCY 439
EN +I+ G V + LL + VR + L N++ D ++ + M L
Sbjct: 153 ENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQ 212
Query: 440 FHEHAE 457
FHEH++
Sbjct: 213 FHEHSK 218
>At4g02150.1 68417.m00287 importin alpha-2 subunit identical to
importin alpha-2 subunit (Karyopherin alpha-2 subunit)
(KAP alpha) SP:O04294 from [Arabidopsis thaliana]
Length = 531
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 260 ENIDEVINQGLVKVAAPLLLDPASSVRNASSGMLRNLSAVKLDICDSLMDQDIMTPLTCY 439
EN + +I G V + LL + VR + L N++ D ++ MTPL
Sbjct: 152 ENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQ 211
Query: 440 FHEHAE 457
F+E+ +
Sbjct: 212 FNENTK 217
>At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic
isozyme 2 / transaminase A (ASP4) identical to aspartate
aminotransferase, cytoplasmic isozyme 2 SP:P46646
[Arabidopsis thaliana]
Length = 405
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 520 VNLLLNLCESSDLAVKYVGQSRILDILPRYLDMSLFGIDIVAAVLQ 657
+ L +C S D+A K Q +L + P YL + G IVA +L+
Sbjct: 260 IGSLTIVCTSEDVAKKVENQV-LLVVRPMYLTPPIHGASIVATILK 304
>At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic
isozyme 2 / transaminase A (ASP4) identical to aspartate
aminotransferase, cytoplasmic isozyme 2 SP:P46646
[Arabidopsis thaliana]
Length = 403
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 520 VNLLLNLCESSDLAVKYVGQSRILDILPRYLDMSLFGIDIVAAVLQ 657
+ L +C S D+A K Q +L + P YL + G IVA +L+
Sbjct: 258 IGSLTIVCTSEDVAKKVENQV-LLVVRPMYLTPPIHGASIVATILK 302
>At2g17230.1 68415.m01990 phosphate-responsive 1 family protein
similar to phi-1 (phosphate-induced gene) [Nicotiana
tabacum] GI:3759184; contains Pfam profile PF04674:
Phosphate-induced protein 1 conserved region
Length = 363
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 722 FDNLI*FFSIASGLSSTTTNRHCSTAATMSIPN 624
F L FF I S L + N+H +T +++IP+
Sbjct: 13 FFTLSSFFYITSSLQNNNNNKHTATVNSLNIPS 45
>At1g77950.1 68414.m09084 MADS-box family protein similar to MADS
box transcription factor GI:1905943 from [Sorghum
bicolor]
Length = 124
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 520 VNLLLNLCESSDLAVKYVGQSRILDILPRYLDM 618
++L L + SD + GQ+RI D+L RY+++
Sbjct: 41 IDLALLMFSPSDRLCLFSGQTRIEDVLARYINL 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,748,825
Number of Sequences: 28952
Number of extensions: 283475
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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