Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00082
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 100 2e-22
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 58 8e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 54 1e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 53 3e-08
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 53 4e-08
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 50 4e-07
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 50 4e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 50 4e-07
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 48 1e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 2e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 5e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 1e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 2e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 42 7e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 1e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 1e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 5e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 7e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 7e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.002
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 37 0.002
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.005
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.008
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.011
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.015
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 34 0.015
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.020
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.026
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 33 0.034
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 33 0.045
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.060
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.079
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.56
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.74
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 0.97
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 28 1.3
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 3.9
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.2
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 26 5.2
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 25 9.1
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 100 bits (240), Expect = 2e-22
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Frame = -1
Query: 494 NGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 318
+G +S + N+ E +P +D K+F+GGL+WETTD LRD+F +GE+ V D TG
Sbjct: 142 SGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTG 201
Query: 317 RSRGFAFIVFKAPESIDKVMA----LVNTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQMM 150
RSRGF F+ FK P+ +++VM+ L ++ R + +
Sbjct: 202 RSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEE 261
Query: 149 KSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 9
+ F++FG +L+ + DK + +GF F+T+E+E V + P
Sbjct: 262 EFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQP 308
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Frame = -3
Query: 255 SGEHTINNKKVDPKKAKARH-----GKIFVGGLSSEISDDEIRNFF 133
S EH ++ K +DPK+A R K+FVGG+ + +++E RNFF
Sbjct: 222 SKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFF 267
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 258 GSGEHTINNKKVDPKKAKARH-GKIFVGGLSSEISDDEIRNFFQ 130
GSG N + R GK+F+GGL+ E +DD +R++F+
Sbjct: 141 GSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFE 184
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 58.4 bits (135), Expect = 8e-10
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = -1
Query: 464 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
S ++ ++ LFVG L +ETTD +L++HFG G+I + + T +TG+ +GF F+ F
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFP 277
Query: 284 APESIDKVMAL 252
++ K M L
Sbjct: 278 DIDTCMKAMEL 288
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 54.4 bits (125), Expect = 1e-08
Identities = 23/59 (38%), Positives = 37/59 (62%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
+FVG LS+ T+ +L FG G+I+SI + TDP +GR +GF ++ F +S K + +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426
Score = 51.2 bits (117), Expect = 1e-07
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Frame = -1
Query: 452 PGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 279
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 278 ESIDKVMA----------LVN------TPSTTRK*TQRRLKHDMGRFLSEDS-------- 171
E+ +A +VN P+ + Q+R + G LSE S
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQR-AGNFGDQLSEPSDTVFVGNL 373
Query: 170 AVKSQMMKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITF 48
+ + T+F G I + +P D + KGF ++TF
Sbjct: 374 SFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
F E+GTI+ + D + KG+ ++ FE+ +
Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 53.2 bits (122), Expect = 3e-08
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = -1
Query: 446 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
+D R +FVG L++E ++ L +FG G I+ + + DP T +GFA+I FK +D
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 266 KVMAL 252
K + L
Sbjct: 326 KALLL 330
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 52.8 bits (121), Expect = 4e-08
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = -1
Query: 464 SAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 291
S G+++DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 290 FKAPES--IDKVMALVNTPSTTRK 225
F P++ I K + +T RK
Sbjct: 140 FINPKTDVISKALKFHHTIYKERK 163
Score = 31.5 bits (68), Expect = 0.10
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -1
Query: 185 LSEDSAVKSQMMKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITF 48
L +DS+V++ + F G + V +P DKT ++KG+ F+ F
Sbjct: 99 LPKDSSVETLQLH----FKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 49.6 bits (113), Expect = 4e-07
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = -1
Query: 440 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 260 MAL 252
+ L
Sbjct: 113 LLL 115
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 49.6 bits (113), Expect = 4e-07
Identities = 28/90 (31%), Positives = 44/90 (48%)
Frame = -1
Query: 521 RQPAYGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 342
R P E G G ++ P + VG LS++ T+ +L D FG + SI
Sbjct: 66 RSPPESRREGGMGSGYQRDAIPIPS-EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIR 122
Query: 341 VKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
+ DP T RSRGF ++ F+ +++ +AL
Sbjct: 123 LVIDPLTERSRGFGYVEFETADTLSAALAL 152
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = -1
Query: 446 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
RDD L V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITF 48
F FG I V + DK + KGF F+++
Sbjct: 222 FRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K + +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 248 N 246
N
Sbjct: 425 N 425
Score = 44.0 bits (99), Expect = 2e-05
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K + +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 248 N------TPS----TTRK*TQRRLKHDMGRFLSEDSAVKSQMMKSETSFSEFGTILEVEM 99
N P + R + R++ + D A+ ++ + +FS FG IL ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKAL--HDTFSAFGKILSCKV 199
Query: 98 PFDKTKNQRKGFCFITFESEQVVN 27
D+ N KG+ F+ F+S + N
Sbjct: 200 AVDELGN-AKGYGFVHFDSVESAN 222
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = -1
Query: 503 NAENGGGDSQDHNSAEAPGRDDDR---KLFVGGLSWETTDKELRDHFGAYGEIESINVKT 333
+ E+ G S D NS RD++ +FV L +E T++EL +HF +G + +
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 332 DPNTGRSRGFAFIVFK 285
DP T RS G FI F+
Sbjct: 311 DPATDRSLGRGFIKFR 326
Score = 41.9 bits (94), Expect = 7e-05
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
LFV L+++T +L + F G I+ V T+P TG +RG+ F+ F E +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.0 bits (104), Expect = 5e-06
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
D + +F+ LS++T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = -1
Query: 503 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 324
N E+ D ++ SA + LFV G++ + EL+ F +G + + + +P
Sbjct: 78 NNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPV 137
Query: 323 TGRSRGFAFIVFKAPESIDKVMALVNT 243
T SRGF F+ F E + +N+
Sbjct: 138 TKASRGFGFLSFSTVEEATSAIDNLNS 164
Score = 29.5 bits (63), Expect = 0.42
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 173 SAVKSQMMKSETS--FSEFGTILEVEMPFDKTKNQRKGFCFITFES 42
S + S+M + E FS+FGT+ V + + +GF F++F +
Sbjct: 106 SGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 43.6 bits (98), Expect = 2e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = -1
Query: 473 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 294
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 293 VFKAPESI 270
F SI
Sbjct: 141 SFDKRSSI 148
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 41.9 bits (94), Expect = 7e-05
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = -1
Query: 440 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 260 MAL 252
+AL
Sbjct: 298 IAL 300
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
+L V + + TD++++ F +G+IE ++++ D + RS+GF +I ++ P S +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEK 399
Query: 251 VN 246
+N
Sbjct: 400 MN 401
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 261
++VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Score = 28.7 bits (61), Expect = 0.74
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Frame = -1
Query: 527 YHRQPAYGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLS---------------WETTD 393
Y R+ NA G S+ + DR+LFVG +S +
Sbjct: 137 YIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRW 196
Query: 392 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA-PESIDKVMALVNT 243
++L+D F G + +++ + GRSRG +V + E++ + L NT
Sbjct: 197 QDLKDLFRQAGSVIRADIQMN-QEGRSRGIGIVVMSSMKEAMHAIQMLHNT 246
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = -1
Query: 440 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
D +++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
Score = 32.3 bits (70), Expect = 0.060
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.1 bits (87), Expect = 5e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 7e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 38.7 bits (86), Expect = 7e-04
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Frame = -1
Query: 482 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGR 315
D+ H SAE P + DD ++FVG LS T E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRG 83
Query: 314 SR----GFAFIVFKAPESIDKVMALVN 246
+R G AF+ F E +DK + +N
Sbjct: 84 TRLVPSGIAFVTFNNQEDVDKAIETLN 110
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
+FVG + ++ +++++ + F G +++ + DP TG +G+ F F E+ + +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 248 N 246
N
Sbjct: 69 N 69
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAL 252
++VG + +E ++++ D F G ++S + DP +G+ +G+ F + P + V L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 251 VNTPSTTRK 225
N + TR+
Sbjct: 67 NNYDAGTRR 75
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
LFVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 251 VN 246
+N
Sbjct: 160 MN 161
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.1 bits (77), Expect = 0.008
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -1
Query: 473 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 345
+++ PG+ D+ ++VG + +D+E+ HF YG++ESI
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 35.1 bits (77), Expect = 0.008
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -1
Query: 482 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTDKELRDHFGAYGEIESINVKTDPNTGRS 312
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 311 RGFAFIVFKAPESIDKVMALVN 246
+G+ F+ F+ E+ + +N
Sbjct: 425 KGYGFVAFRQIEAAVRAKDTLN 446
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 240 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFF 133
+NN K+ P + + I+VG + S +SD+EI F
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHF 37
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.7 bits (76), Expect = 0.011
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 288
+FVG LS + ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 30.7 bits (66), Expect = 0.18
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 219 PKKAKARHGKIFVGGLSSEISDDEIRNFFQ 130
P+ A + +FVGGLS +S++E++ FQ
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQ 324
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 318
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.015
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITF 48
F FG + +V MP DK N KGF +I F
Sbjct: 343 FGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 34.3 bits (75), Expect = 0.015
Identities = 13/62 (20%), Positives = 34/62 (54%)
Frame = -1
Query: 440 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
+ R+L+V + ++ +K++ F YG++ES+ + N + +GF ++V + +
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENA 812
Query: 260 MA 255
++
Sbjct: 813 LS 814
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.9 bits (74), Expect = 0.020
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAL 252
++VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D + +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 251 VNT 243
T
Sbjct: 94 SRT 96
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.5 bits (73), Expect = 0.026
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 276
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 33.1 bits (72), Expect = 0.034
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 12
FS+FG +L + M ++ K + FI FES V N + +T
Sbjct: 125 FSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 32.7 bits (71), Expect = 0.045
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -1
Query: 440 DDRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 279
++ K+ V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.060
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 324
R +F+G L +KE+ + FG +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.9 bits (69), Expect = 0.079
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 392 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAL 252
++L + F +G I+S + + P+T S+G+ F+ F P E++ + L
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTL 482
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 29.1 bits (62), Expect = 0.56
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 422 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
VG L+ T+ L + F +GEI S+ + R +AF+ F PE + M +N
Sbjct: 10 VGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENMN 67
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 0.74
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 324
R +F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 467 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 324
N A A R +++G T + L++ F +GEIE +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 0.97
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
D K+++ L + ++ + +G++ S + + G S+GF F FK P +
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAE 365
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 458 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 345
E P LF+ G+ E D ++R HF YG ++S+
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSV 241
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGAYGEI 354
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITF 48
F +G I + MP K KG+C+I +
Sbjct: 119 FGIYGLIDHIFMPIYKKSELNKGYCYIEY 147
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -2
Query: 376 ILEH--TVK*RVLM*RQ--IQTQADHEGLPSLCLRPQSQ*TRSWLW*THHQQQESRP 218
+L+H T K R++M R ++ A+H +P + L P RSW+W E P
Sbjct: 123 LLKHKETGKTRLVMRRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADVSEGEP 179
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -3
Query: 189 IFVGGLSSEISDDEIRNFFQ 130
+FVGGL+S +S+ +++ FQ
Sbjct: 299 VFVGGLASNLSEKDLQVCFQ 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,763
Number of Sequences: 5004
Number of extensions: 52784
Number of successful extensions: 209
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -