Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00082
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.11 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.7  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   9.9  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -1

Query: 539 CTRYYHRQPAYGNAENGGGDSQDHNSAEAPGRDDDRK 429
           C RY+++     NA+N   D+Q+ N+  A  ++ +++
Sbjct: 419 CGRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQ 455


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 49  NVMKQKPFLWFFVLSKGISTSKIVPNSLKEVSDFII*DFTAESSDKNLPMSCFS 210
           NV+    FL  FV++   S+ +I    + E+      +   +S+ K +P+SC S
Sbjct: 13  NVLFVNSFL--FVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPVSCIS 64


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 49  NVMKQKPFLWFFVLSKGISTSKIVPNSLKEVSDFII*DFTAESSDKNLPMSCFS 210
           NV+    FL  FV++   S+ +I    + E+      +   +S+ K +P+SC S
Sbjct: 13  NVLFVNSFL--FVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPVSCIS 64


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 49  NVMKQKPFLWFFVLSKGISTSKIVPNSLKEVSDFII*DFTAESSDKNLPMSCFS 210
           NV+    FL  FV++   S+ +I    + E+      +   +S+ K +P+SC S
Sbjct: 13  NVLFVNSFL--FVIAAQDSSGRIFTICVPEIYSKECDEMKKDSAVKGIPVSCIS 64


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 452 GPQHCYDLANHRHRSLHFHKLVVGGNILCKI 544
           G Q+  ++ N+ HR L    ++V   ++CKI
Sbjct: 747 GMQYLAEM-NYVHRDLAARNVLVNAALVCKI 776


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 419 GGLSWETTDKELRD 378
           GG+ WE  +KE+ D
Sbjct: 100 GGIFWEGLEKEVGD 113


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 477 RITATVLCISISWLSVVISCAKLSLLAMTK 566
           R+T  VL     WLS+  S   +  LA  +
Sbjct: 61  RVTCDVLSWQSKWLSINHSACAIRCLAQRR 90


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 357 FTVCSKMITELLICGLPAQPTNKK 428
           FT+ S + T +++C  PA   N K
Sbjct: 493 FTIASIVGTFIILCEAPALRDNTK 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,816
Number of Sequences: 438
Number of extensions: 3373
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)