Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00082
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 85 3e-17
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 85 3e-17
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 81 8e-16
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 79 2e-15
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 77 1e-14
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 77 1e-14
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 75 3e-14
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 75 3e-14
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 70 1e-12
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 70 1e-12
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 69 2e-12
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 69 3e-12
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 69 3e-12
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 69 3e-12
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 69 3e-12
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 69 3e-12
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 67 1e-11
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 65 3e-11
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 64 7e-11
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 64 7e-11
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 3e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 62 4e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 62 4e-10
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 61 7e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 61 7e-10
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 60 9e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 60 1e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 60 2e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 59 2e-09
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 59 2e-09
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 59 2e-09
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 59 2e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 58 6e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 58 6e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 58 6e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 58 6e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 58 6e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 57 8e-09
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 56 1e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 56 1e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 56 2e-08
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 56 2e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 56 3e-08
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 56 3e-08
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 55 3e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 55 3e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 54 6e-08
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 54 6e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 54 6e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 54 6e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 54 6e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 54 6e-08
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 54 6e-08
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 54 8e-08
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 53 1e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 53 1e-07
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 53 2e-07
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 53 2e-07
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 52 2e-07
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 52 2e-07
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 52 3e-07
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 52 3e-07
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 52 4e-07
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 52 4e-07
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 52 4e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 50 1e-06
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 50 1e-06
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 50 1e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 50 1e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 50 1e-06
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 49 2e-06
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 49 2e-06
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 49 2e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 3e-06
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 49 3e-06
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 48 4e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 48 4e-06
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 48 5e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 7e-06
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 48 7e-06
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 48 7e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 48 7e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 47 9e-06
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 47 9e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 47 9e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 47 9e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 47 9e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 47 1e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 47 1e-05
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 47 1e-05
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 47 1e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 2e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 46 2e-05
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 46 2e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 46 2e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 46 2e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 2e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 46 3e-05
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 46 3e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 46 3e-05
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 46 3e-05
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 45 4e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 45 4e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 45 4e-05
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 45 4e-05
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 45 4e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 45 5e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 45 5e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 45 5e-05
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 44 6e-05
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 44 6e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 6e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 44 8e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 44 8e-05
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 44 8e-05
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 44 1e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 44 1e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 44 1e-04
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 43 1e-04
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 43 1e-04
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 43 1e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 43 2e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 43 2e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 42 3e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 42 3e-04
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 42 4e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 42 4e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 41 6e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 41 6e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 41 6e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 41 6e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 41 8e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 41 8e-04
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 41 8e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 40 0.001
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 40 0.001
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 40 0.001
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 0.001
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 40 0.002
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.002
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.002
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.003
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 39 0.003
At2g47310.1 68415.m05906 flowering time control protein-related ... 39 0.003
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 39 0.003
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 39 0.003
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 38 0.004
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 38 0.004
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 38 0.004
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 38 0.004
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 38 0.006
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.007
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.007
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 37 0.010
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.010
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 37 0.013
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 37 0.013
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.017
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 36 0.017
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.017
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.017
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.017
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.022
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.022
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.022
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.030
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 35 0.039
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 35 0.039
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 34 0.068
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 34 0.068
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 34 0.090
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.12
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.12
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.21
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 33 0.21
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 32 0.28
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 32 0.28
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 32 0.28
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 32 0.28
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 32 0.28
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 32 0.28
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.28
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 32 0.36
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 32 0.36
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 32 0.36
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 31 0.48
At5g03480.1 68418.m00304 expressed protein ; expression support... 31 0.84
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.84
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 30 1.1
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 30 1.1
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 30 1.1
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 30 1.1
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 30 1.5
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 30 1.5
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 1.9
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 29 1.9
At5g05230.1 68418.m00558 expressed protein 29 2.6
At5g04770.1 68418.m00492 amino acid permease family protein simi... 29 2.6
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 29 2.6
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 3.4
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 3.4
At2g47390.1 68415.m05915 expressed protein 29 3.4
At2g04280.1 68415.m00420 expressed protein 29 3.4
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 4.5
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 28 5.9
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 28 5.9
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 28 5.9
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 27 7.8
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 27 7.8
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 85.4 bits (202), Expect = 3e-17
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 10/167 (5%)
Frame = -1
Query: 488 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 309
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 308 GFAFIVFKAPESIDKVMALVNTPSTTRK*TQRRLKHDMGRFLSED--------SAVKSQM 153
GF FI F P +DKV+ + + + +R + G S+D + S +
Sbjct: 61 GFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTV 120
Query: 152 MKSETS--FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 18
+ E F+++G ++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 255
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 254 LVN 246
N
Sbjct: 169 KGN 171
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
F ++G I + + D+ Q +GF FITF VV+ +++
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 85.4 bits (202), Expect = 3e-17
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 10/167 (5%)
Frame = -1
Query: 488 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 309
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 308 GFAFIVFKAPESIDKVMALVNTPSTTRK*TQRRLKHDMGRFLSED--------SAVKSQM 153
GF FI F P +DKV+ + + + +R + G S+D + S +
Sbjct: 61 GFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTV 120
Query: 152 MKSETS--FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 18
+ E F+++G ++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 255
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 254 LVN 246
N
Sbjct: 169 KGN 171
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
F ++G I + + D+ Q +GF FITF VV+ +++
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 80.6 bits (190), Expect = 8e-16
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 24/165 (14%)
Frame = -1
Query: 440 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D KLFVGG+SWET + +LR+HF YGE+ V D TGR RGF F++F P +D+V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 260 MALVNTPSTTRK*TQRRLKHD-------MGRFLSEDSAVKSQMMKSETSF---------- 132
+ ++ T +R + + G + S+ K++ F
Sbjct: 64 LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123
Query: 131 SEF-------GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 18
EF G + +V + +D+ N+ +GF F++F+SE V+ +L
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Score = 57.2 bits (132), Expect = 8e-09
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = -1
Query: 485 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 306
G+ S+ + +K+FVGGL TD+E R +F YG + + + D T R RG
Sbjct: 93 GNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRG 152
Query: 305 FAFIVFKAPESIDKVM 258
F F+ F + +++D V+
Sbjct: 153 FGFVSFDSEDAVDSVL 168
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 240 INNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFQ 130
+N + A + KIFVGGL ++D+E R +F+
Sbjct: 95 LNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFE 131
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 195 GKIFVGGLSSEISDDEIRNFF 133
GK+FVGG+S E +D++R F
Sbjct: 6 GKLFVGGISWETDEDKLREHF 26
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 79.4 bits (187), Expect = 2e-15
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 8/173 (4%)
Frame = -1
Query: 497 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 318
E+ SQ H+ G D K+FVGGL+ ETT E HFG YGEI + D TG
Sbjct: 24 EDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTG 80
Query: 317 RSRGFAFIVFKAPESIDKVMA---LVNTPSTTRK*TQRRLKHDMGRFLSED---SAVKSQ 156
+ RGF F+ + +DKV+ ++ K T R F ++ + S
Sbjct: 81 QPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSS 140
Query: 155 MMKSETS--FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
+ E F +FG + E ++ D + + +GF F+T+ESE +V+ LL R
Sbjct: 141 VDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNR 193
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 76.6 bits (180), Expect = 1e-14
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 23/168 (13%)
Frame = -1
Query: 446 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P +
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
Query: 266 KVMA--------LVNTPSTTRK*TQRRLKHDMGRFLSED------------SAVKSQMMK 147
V+ LV + Q + + + S + +
Sbjct: 62 IVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTE 121
Query: 146 SE--TSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 12
S+ T F +FGT +V + +D + +GF FIT++SE+ V LLKT
Sbjct: 122 SDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/82 (36%), Positives = 43/82 (52%)
Frame = -1
Query: 503 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 324
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 323 TGRSRGFAFIVFKAPESIDKVM 258
T R RGF FI + + E+++KV+
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVL 166
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 6
FS FG ++E + D+T + +GF F+ F ++ V +++ T K
Sbjct: 26 FSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEK 67
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 201 RHGKIFVGGLSSEISDDEIRNFFQ 130
R KIFVGGL S +++ + + +F+
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFE 129
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 76.6 bits (180), Expect = 1e-14
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 23/168 (13%)
Frame = -1
Query: 446 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P +
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
Query: 266 KVMA--------LVNTPSTTRK*TQRRLKHDMGRFLSED------------SAVKSQMMK 147
V+ LV + Q + + + S + +
Sbjct: 62 IVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTE 121
Query: 146 SE--TSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 12
S+ T F +FGT +V + +D + +GF FIT++SE+ V LLKT
Sbjct: 122 SDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/82 (36%), Positives = 43/82 (52%)
Frame = -1
Query: 503 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 324
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 323 TGRSRGFAFIVFKAPESIDKVM 258
T R RGF FI + + E+++KV+
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVL 166
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 6
FS FG ++E + D+T + +GF F+ F ++ V +++ T K
Sbjct: 26 FSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEK 67
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 201 RHGKIFVGGLSSEISDDEIRNFFQ 130
R KIFVGGL S +++ + + +F+
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFE 129
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 75.4 bits (177), Expect = 3e-14
Identities = 47/159 (29%), Positives = 87/159 (54%), Gaps = 20/159 (12%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+ L
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 251 VNTPSTTRK*TQRRL-KHDMGRFLSEDSAVK-----------------SQMMKSETS--F 132
+ ++ + + D F +S+++ S + ++E F
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 126
Query: 131 SEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
++FG I +V + +D + +GF FI+++SE+ V+ +L+
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/66 (39%), Positives = 41/66 (62%)
Frame = -1
Query: 455 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 276
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 275 SIDKVM 258
++DKV+
Sbjct: 159 AVDKVL 164
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = -3
Query: 192 KIFVGGLSSEISDDEIRNFF 133
K+F+GG+S E S+D +R++F
Sbjct: 7 KLFIGGISWETSEDRLRDYF 26
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 237 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 133
+N + + KIFVGGL+S +++ E + +F
Sbjct: 92 SNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 126
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 75.4 bits (177), Expect = 3e-14
Identities = 47/159 (29%), Positives = 87/159 (54%), Gaps = 20/159 (12%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+ L
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 251 VNTPSTTRK*TQRRL-KHDMGRFLSEDSAVK-----------------SQMMKSETS--F 132
+ ++ + + D F +S+++ S + ++E F
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 126
Query: 131 SEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
++FG I +V + +D + +GF FI+++SE+ V+ +L+
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 165
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/66 (39%), Positives = 41/66 (62%)
Frame = -1
Query: 455 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 276
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 275 SIDKVM 258
++DKV+
Sbjct: 159 AVDKVL 164
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = -3
Query: 192 KIFVGGLSSEISDDEIRNFF 133
K+F+GG+S E S+D +R++F
Sbjct: 7 KLFIGGISWETSEDRLRDYF 26
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 237 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 133
+N + + KIFVGGL+S +++ E + +F
Sbjct: 92 SNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 126
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 69.7 bits (163), Expect = 1e-12
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
+RKL V G+ W+ L+D+ +G++E V D +TGRSRGF ++ F + E +
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 257 --------ALVNTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQMMKSE--TSFSEFGTILE 108
++ T K R+ + R + + S + +S+ + F +G I +
Sbjct: 62 KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFV--ARIPSSVSESDFRSHFERYGEITD 119
Query: 107 VEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
+ MP D Q +G FITF S V DL++
Sbjct: 120 LYMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = -1
Query: 470 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 291
+ E R K+FVG L E + +LRD+FG +G I+ + DP RGF F+
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 290 FKAPESIDKV 261
F D+V
Sbjct: 288 FAENGVADRV 297
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 27
F FG I + +P D ++ +GF F+TF V +
Sbjct: 260 FGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVAD 295
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 69.7 bits (163), Expect = 1e-12
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 11/169 (6%)
Frame = -1
Query: 479 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 300
S DH + + KLFVGG+SWETT + ++FG +GE+ + TD TG RGF
Sbjct: 52 SVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFG 110
Query: 299 FIVFKAPESIDKVMALVNTPSTTRK*TQRRL-KHDMGRFLSEDSAVKSQMM--------- 150
F+ F +KV+ + + +R L + D + S + +
Sbjct: 111 FVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEE 170
Query: 149 -KSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 6
+ + F +G I+E ++ +D + +GF F+TF++E V+ L K
Sbjct: 171 DELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGK 219
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 12/51 (23%)
Frame = -3
Query: 249 EHTINNKKVDPK------------KAKARHGKIFVGGLSSEISDDEIRNFF 133
+H I+++KVD K KA ++ KIFVGGL + +DE++N+F
Sbjct: 127 DHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYF 177
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 69.3 bits (162), Expect = 2e-12
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 24/165 (14%)
Frame = -1
Query: 440 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D KLF+GG+SW+T + LR++F +GE+ + V + TGR RGF F+ F P ID+V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 260 MA----LVNTPSTTRK*TQRRLKHDMGR---FLSE---DSAVKSQMMK--------SETS 135
+ + N ++ R + GR F + DS + K + TS
Sbjct: 64 LQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTS 123
Query: 134 ------FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 18
F +G + + + D+T + +GF F++F+SE V+ +L
Sbjct: 124 DEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
FS FG +L+V + +K + +GF F+ F V++ +L+
Sbjct: 26 FSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 243 TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFQ 130
T N + A R KIFVGGL ++ DE R +F+
Sbjct: 94 TFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFE 131
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 68.9 bits (161), Expect = 3e-12
Identities = 30/59 (50%), Positives = 39/59 (66%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 255
K+FVGGL+WET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
Score = 30.7 bits (66), Expect = 0.84
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 9
F ++G ILE + DK + KG+ F+TF + P
Sbjct: 44 FEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 68.5 bits (160), Expect = 3e-12
Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 24/162 (14%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-- 258
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 257 ------ALVNTPSTTRK*TQRRLK------HDMGRFLSEDSAVKSQM---MKSETSFSEF 123
V + Q+ LK H M K + S + EF
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 122 -------GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 18
GTI +V + +D + +GF FITF+S+ V+ +L
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 57.6 bits (133), Expect = 6e-09
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -3
Query: 201 RHGKIFVGGLSSEISDDEIRNFF 133
R KIFVGGL S I+++E +N+F
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYF 130
Score = 27.9 bits (59), Expect = 5.9
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = -3
Query: 195 GKIFVGGLSSEISDDEIRNFF 133
GK+F+GG+S + ++ +R++F
Sbjct: 6 GKLFIGGISWDTDEERLRDYF 26
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 68.5 bits (160), Expect = 3e-12
Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 24/162 (14%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-- 258
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 257 ------ALVNTPSTTRK*TQRRLK------HDMGRFLSEDSAVKSQM---MKSETSFSEF 123
V + Q+ LK H M K + S + EF
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 122 -------GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 18
GTI +V + +D + +GF FITF+S+ V+ +L
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 57.6 bits (133), Expect = 6e-09
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -3
Query: 201 RHGKIFVGGLSSEISDDEIRNFF 133
R KIFVGGL S I+++E +N+F
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYF 130
Score = 27.9 bits (59), Expect = 5.9
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = -3
Query: 195 GKIFVGGLSSEISDDEIRNFF 133
GK+F+GG+S + ++ +R++F
Sbjct: 6 GKLFIGGISWDTDEERLRDYF 26
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 68.5 bits (160), Expect = 3e-12
Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 24/162 (14%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-- 258
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 257 ------ALVNTPSTTRK*TQRRLK------HDMGRFLSEDSAVKSQM---MKSETSFSEF 123
V + Q+ LK H M K + S + EF
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEF 126
Query: 122 -------GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 18
GTI +V + +D + +GF FITF+S+ V+ +L
Sbjct: 127 KNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 57.6 bits (133), Expect = 6e-09
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -3
Query: 201 RHGKIFVGGLSSEISDDEIRNFF 133
R KIFVGGL S I+++E +N+F
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYF 130
Score = 27.9 bits (59), Expect = 5.9
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = -3
Query: 195 GKIFVGGLSSEISDDEIRNFF 133
GK+F+GG+S + ++ +R++F
Sbjct: 6 GKLFIGGISWDTDEERLRDYF 26
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
K+FVGGL+WET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
F ++G ILE + DK + KG+ F+TF +
Sbjct: 44 FDQYGDILEAVVITDKNTGRSKGYGFVTFRDPE 76
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 66.9 bits (156), Expect = 1e-11
Identities = 26/58 (44%), Positives = 41/58 (70%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
KLF+GG+SW+T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI 73
Score = 58.0 bits (134), Expect = 5e-09
Identities = 26/59 (44%), Positives = 37/59 (62%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
+K+FVGGL T+ E +++F +G I + V D NT R RGF FI F + ES+D V+
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 18
F +FGTI +V + +D + +GF FITF+SE+ V+ +L
Sbjct: 142 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -3
Query: 204 ARHGKIFVGGLSSEISDDEIRNFF 133
AR KIFVGGL S I++ E +N+F
Sbjct: 119 ARTKKIFVGGLPSSITEAEFKNYF 142
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = -1
Query: 200 DMGRFLSEDSAVKSQMMKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 21
D+G+ + + + + F ++G ++E + D+T + +GF FI F V +
Sbjct: 13 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72
Query: 20 L 18
+
Sbjct: 73 I 73
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 65.3 bits (152), Expect = 3e-11
Identities = 28/66 (42%), Positives = 42/66 (63%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
D + + F+GGL+W T+D+ LRD F YG + V D +GRSRGF FI F +++D+
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 263 VMALVN 246
+A +N
Sbjct: 64 AIAAMN 69
Score = 33.5 bits (73), Expect = 0.12
Identities = 11/40 (27%), Positives = 27/40 (67%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 18
+F ++G ++E ++ DK + +GF FITF+ ++ +++ +
Sbjct: 26 AFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAI 65
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 64.1 bits (149), Expect = 7e-11
Identities = 29/69 (42%), Positives = 43/69 (62%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 251 VNTPSTTRK 225
N RK
Sbjct: 78 PNPVIDGRK 86
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 9
F +FG ILE + DK + KG+ F+TF + P
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 192 KIFVGGLSSEISDDEIRNFFQ*IWNYLRSGDAL*QNKEPKKGLLF 58
K+FVGGL+ E DE+R +F+ L + +N KG F
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGF 62
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 64.1 bits (149), Expect = 7e-11
Identities = 29/69 (42%), Positives = 43/69 (62%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 251 VNTPSTTRK 225
N RK
Sbjct: 78 PNPVIDGRK 86
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 9
F +FG ILE + DK + KG+ F+TF + P
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 192 KIFVGGLSSEISDDEIRNFFQ*IWNYLRSGDAL*QNKEPKKGLLF 58
K+FVGGL+ E DE+R +F+ L + +N KG F
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGF 62
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
K+FVGGL+WET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
F +FG I+E + DK + KG+ F+TF+ +
Sbjct: 42 FEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAE 74
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
KLFVGGLSW T D L+ F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
+F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
KLFVGGLSW T D L+ F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
+F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 54 AFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/60 (45%), Positives = 36/60 (60%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
K+FVGG+S+ T + LR+ F YGE+ + D TGRSRGFAF+ F + E M L
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Score = 32.3 bits (70), Expect = 0.28
Identities = 10/41 (24%), Positives = 27/41 (65%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
+FS++G +++ ++ D+ + +GF F+TF S + ++ ++
Sbjct: 53 AFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/69 (40%), Positives = 42/69 (60%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
K+FVGGL+WET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 251 VNTPSTTRK 225
N RK
Sbjct: 78 PNPVIDGRK 86
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 9
F +FG ILE + DK + KG+ F+TF + P
Sbjct: 37 FDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 198 HGKIFVGGLSSEISDDEIRNFF 133
H K+FVGGL+ E DE+R +F
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYF 37
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/66 (39%), Positives = 41/66 (62%)
Frame = -1
Query: 455 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 276
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Query: 275 SIDKVM 258
++DKV+
Sbjct: 86 AVDKVL 91
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/40 (35%), Positives = 28/40 (70%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
F++FG I +V + +D + +GF FI+++SE+ V+ +L+
Sbjct: 53 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 92
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 237 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 133
+N + + KIFVGGL+S +++ E + +F
Sbjct: 19 SNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 53
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITF 48
F +FG I+E + DK+ + KG+ F+TF
Sbjct: 27 FEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITF 48
F +FG I+E + DK+ + KG+ F+TF
Sbjct: 27 FEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 28.3 bits (60), Expect = 4.5
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 39
+F+ FG +++ ++ D+ + +GF F+ F E
Sbjct: 54 AFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 28.3 bits (60), Expect = 4.5
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 39
+F+ FG +++ ++ D+ + +GF F+ F E
Sbjct: 54 AFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -1
Query: 458 EAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
E+ RD R +FV GL W+TT + L+ F YGEI +V D +TGR++GF F++FK
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFK 212
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
+ +F +G I E + DK + KGF F+ F++ + LK P++
Sbjct: 180 KAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEK 226
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
KLF+GGLSW ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 34.7 bits (76), Expect = 0.052
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 170 AVKSQMMKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 39
+V Q +K +FS FG + EV + +DK + +GF F+ F E
Sbjct: 51 SVDEQSLKD--AFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = -1
Query: 458 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
F +G I E + DK + KGF F+ F++ + + LK PK+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKK 167
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = -1
Query: 458 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
F +G I E + DK + KGF F+ F++ + + LK PK+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKK 167
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = -1
Query: 458 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
E+ RD R +FV G W+TT + L+ F +YGEIE +V D +TGR +G+ F++FK
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFK 457
Score = 35.1 bits (77), Expect = 0.039
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
+T+F +G I E + DK + KG+ F+ F++ + + LK P++
Sbjct: 425 KTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEK 471
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 57.6 bits (133), Expect = 6e-09
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 263 VMALVN 246
+ +N
Sbjct: 65 AIEGMN 70
Score = 37.1 bits (82), Expect = 0.010
Identities = 12/43 (27%), Positives = 30/43 (69%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
ET+F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 25 ETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 57.6 bits (133), Expect = 6e-09
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 263 VMALVN 246
+ +N
Sbjct: 65 AIEGMN 70
Score = 37.1 bits (82), Expect = 0.010
Identities = 12/43 (27%), Positives = 30/43 (69%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
ET+F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 25 ETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 57.6 bits (133), Expect = 6e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
F +FG ILE + DK + KG+ F+TF +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAE 65
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 57.6 bits (133), Expect = 6e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
F +FG ILE + DK + KG+ F+TF +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAE 65
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 57.6 bits (133), Expect = 6e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
F +FG ILE + DK + KG+ F+TF +
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVTFREAE 65
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 57.2 bits (132), Expect = 8e-09
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = -1
Query: 506 GNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 333
G+A GD + ++A D D +LFV L + T++EL +HF +G+I +++
Sbjct: 235 GDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVL 294
Query: 332 DPNTGRSRGFAFIVFKAPESIDKVMALVNTPS 237
D T RSRG A+I++ PE + M ++ S
Sbjct: 295 DKETKRSRGIAYILYLIPECAARAMEELDNSS 326
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 255
KL V +++E T +ELR F +G+I+S+ + N G+ G+AF+ F E+++ A
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRL-PKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 254 LVNT 243
L +T
Sbjct: 729 LAST 732
Score = 30.7 bits (66), Expect = 0.84
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
Frame = -1
Query: 452 PGRDDDRKLFVGGLSWETTDKELRDHFG---AYGEIESINVKTDPNTGR--SRGFAFIVF 288
P + L V LS++TTD+ L+ HF G+I S+ + + S G+ F+ F
Sbjct: 563 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 622
Query: 287 KAPESIDKVM-----ALVNTPSTTRK*TQRRLKHDMGRFLSEDS----------AVKSQM 153
+ E+ V +++ + + + + +G+ ++D A ++
Sbjct: 623 DSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATK 682
Query: 152 MKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
+ FS FG I + +P K Q G+ F+ F ++Q
Sbjct: 683 RELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEFVTKQ 720
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 56.4 bits (130), Expect = 1e-08
Identities = 25/66 (37%), Positives = 37/66 (56%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
D K++ G L W T + L+D FG + V + NTGRSRGF FI F++ E++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 263 VMALVN 246
+A +N
Sbjct: 276 ALATMN 281
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = -1
Query: 476 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 297
++ + +A G ++ +L+VG L + T EL FG G + + + D T RSRGF F
Sbjct: 104 EEKQTTQASG--EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGF 161
Query: 296 IVFKAPESIDKVMALVNT 243
+ + E + M + N+
Sbjct: 162 VTMGSIEEAKEAMQMFNS 179
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
F E GT+++V++ +DK ++ +GF F+T S + + ++
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ 175
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 56.4 bits (130), Expect = 1e-08
Identities = 25/62 (40%), Positives = 41/62 (66%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
+LFV GLS TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 251 VN 246
+N
Sbjct: 95 MN 96
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 149 KSETSFSEFGTILEVEMPFDKTKNQRKGFCFITF 48
K + +F+ FG +++ + D+ + KGF F+T+
Sbjct: 49 KLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
E++F +G I E ++ + + +GF FITF + +D +K
Sbjct: 29 ESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
E++F +G I E ++ + + +GF FITF + +D +K
Sbjct: 29 ESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = -1
Query: 521 RQPAYGNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYG 360
R YG+ +GGG S S G +L+VG LSW D L + F G
Sbjct: 214 RGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQG 273
Query: 359 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
++ V D ++GRS+GF F+ + + + K + +N
Sbjct: 274 KVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 311
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/72 (34%), Positives = 33/72 (45%)
Frame = -1
Query: 482 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 303
D D E D KLFVG LS+ +L F + G +E + V D TGRSRGF
Sbjct: 83 DGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142
Query: 302 AFIVFKAPESID 267
F+ ++
Sbjct: 143 GFVTMSTAAEVE 154
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 152 MKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 12
M E F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 263 MALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = -1
Query: 521 RQPAYGNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYG 360
R YG+ +GGG S S G +L+VG LSW D L + F G
Sbjct: 222 RGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQG 281
Query: 359 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
++ V D ++GRS+GF F+ + + + K + +N
Sbjct: 282 KVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 319
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/72 (34%), Positives = 33/72 (45%)
Frame = -1
Query: 482 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 303
D D E D KLFVG LS+ +L F + G +E + V D TGRSRGF
Sbjct: 83 DGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142
Query: 302 AFIVFKAPESID 267
F+ ++
Sbjct: 143 GFVTMSTAAEVE 154
Score = 34.7 bits (76), Expect = 0.052
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 152 MKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 12
M E F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 271 MALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
K+FVG L+W TT +LR +F +G++ NV ++ GRS+G+ FI F+ + + V AL
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFR--DYVSTVRAL 70
Query: 251 VNT 243
N+
Sbjct: 71 QNS 73
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 55.2 bits (127), Expect = 3e-08
Identities = 23/66 (34%), Positives = 39/66 (59%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
D++ + FVGGL+W T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRT 100
Query: 263 VMALVN 246
+ +N
Sbjct: 101 AIDRMN 106
Score = 33.9 bits (74), Expect = 0.090
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 39
E F+EFG + + ++ D+ + KGF F+TF+ E
Sbjct: 61 ERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE 95
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
KLF+GG+++ + LR+ F YGE+ V D TGRSRGF F+ F + E+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEA 93
Score = 30.7 bits (66), Expect = 0.84
Identities = 9/41 (21%), Positives = 25/41 (60%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
+F+++G +++ + D+ + +GF F+TF S + + ++
Sbjct: 59 AFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 54.4 bits (125), Expect = 6e-08
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
++FVGGLS E TD++L F +G+I + + +TGRSRGF FI F ++D+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE 63
Score = 34.7 bits (76), Expect = 0.052
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
E +FS FG IL+ ++ ++ + +GF FITF + +++ ++
Sbjct: 24 ERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 54.4 bits (125), Expect = 6e-08
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +++ +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 251 VN 246
+N
Sbjct: 67 MN 68
Score = 36.3 bits (80), Expect = 0.017
Identities = 12/43 (27%), Positives = 29/43 (67%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
+ +FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 54.4 bits (125), Expect = 6e-08
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +++ +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 251 VN 246
+N
Sbjct: 67 MN 68
Score = 36.3 bits (80), Expect = 0.017
Identities = 12/43 (27%), Positives = 29/43 (67%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
+ +FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 54.4 bits (125), Expect = 6e-08
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +++ +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 251 VN 246
+N
Sbjct: 67 MN 68
Score = 36.3 bits (80), Expect = 0.017
Identities = 12/43 (27%), Positives = 29/43 (67%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
+ +FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 54.4 bits (125), Expect = 6e-08
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +++ +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 251 VN 246
+N
Sbjct: 67 MN 68
Score = 36.3 bits (80), Expect = 0.017
Identities = 12/43 (27%), Positives = 29/43 (67%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
+ +FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/59 (38%), Positives = 37/59 (62%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
+K+FVGGLS TT++E + +F +G + V D T R RGF F+ + + +S++ VM
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVM 178
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = -1
Query: 443 DDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
D DR KLFVGG++ ET+++ L+ +F YG + V + TG+ RGF F+ F D
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF--ANDCD 59
Query: 266 KVMALVNT 243
V AL +T
Sbjct: 60 VVKALRDT 67
Score = 31.5 bits (68), Expect = 0.48
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = -3
Query: 204 ARHGKIFVGGLSSEISDDEIRNFFQ 130
+R KIFVGGLSS +++E +++F+
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFE 141
Score = 31.5 bits (68), Expect = 0.48
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 12
F FG +V + D N+ +GF F+T++SE V ++++
Sbjct: 140 FERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESE-QVVNDLLKT 12
FS +G +LE + +K + +GF F+ F ++ VV L T
Sbjct: 26 FSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/73 (36%), Positives = 38/73 (52%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
+ K++VG L W T LR+HF +G I S V D TGR+R FAF+ F + E D
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 263 VMALVNTPSTTRK 225
++ T R+
Sbjct: 269 ALSFNGTQYEGRR 281
Score = 32.7 bits (71), Expect = 0.21
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Frame = -1
Query: 389 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVNTPSTTRK*TQRR 210
+L D F +G + S+ V +P TG SRG ++ + S +A ++ + + R
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
Query: 209 LKHDMGRFLSEDSAVKSQMMKSETSFSEFGTILEVEMP-FDKTKNQRKGFC-FITFESEQ 36
DM + V + K + + +P F + R F F T S +
Sbjct: 183 YSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTR 242
Query: 35 VVND 24
V++D
Sbjct: 243 VLHD 246
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 282
RK+FV GL W+T L D F YGEIE D +G+S+G+ FI+FK+
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKS 178
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
RK++V +S + ++L + F +GEIE + D TGR +GFA V+++ ES K +
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
FS FG I E + DK + KGF + S + L+ P +
Sbjct: 247 FSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHK 290
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
K++VGGL W T + L + F +GEI +NV D T RS+G+ F+ FK ES
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAES 66
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 9
F FG I+ V + D+ ++ +G+ F+TF+ + K P
Sbjct: 33 FKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDP 74
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/79 (32%), Positives = 47/79 (59%)
Frame = -1
Query: 482 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 303
DS+D + +E+P +KLF+ GLS+ T++K LR F +GE+ + + D + RS+G+
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325
Query: 302 AFIVFKAPESIDKVMALVN 246
AF+ + E+ + +N
Sbjct: 326 AFLEYTTEEAAGTALKEMN 344
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
DRKL+VG L + ++ +LR F A+G +E + + DP TG+ +GF FI F
Sbjct: 264 DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 40.3 bits (90), Expect = 0.001
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 17/162 (10%)
Frame = -1
Query: 482 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 303
D +D A+ P RD R +F + + T++++ + F G++ + + D N+ RS+G
Sbjct: 154 DKKDEPEAD-PERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 211
Query: 302 AFIVFKAPESIDKVMALVNT----------PSTTRK*TQRRLKHDMGRFLSEDSAV---- 165
+I F S+ +AL PS K + +G D +
Sbjct: 212 GYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGN 271
Query: 164 ---KSQMMKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITF 48
++ F FG + V++P D Q KGF FI F
Sbjct: 272 LHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
K+FVGGL+W+T + + DHF YG+I + +D T RS+G+ F+ FK
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFE 45
F ++G ILE + DK + KG+ F+TF+
Sbjct: 37 FIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 52.4 bits (120), Expect = 2e-07
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------K 285
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 284 AP-ESIDKVMALVNTPSTTRK*TQRRLKH-DMGRFLSEDSAVKSQMMKSETSFSEFGTIL 111
P + ID + + ++ + T ++ M + + + F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 110 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 9
E + FDK + +GF +++ + L P
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADP 228
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
FS +G + E + DK + KG+ F+TF LK P +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSK 138
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 52.4 bits (120), Expect = 2e-07
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------K 285
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 284 AP-ESIDKVMALVNTPSTTRK*TQRRLKH-DMGRFLSEDSAVKSQMMKSETSFSEFGTIL 111
P + ID + + ++ + T ++ M + + + F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 110 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 9
E + FDK + +GF +++ + L P
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADP 228
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
FS +G + E + DK + KG+ F+TF LK P +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSK 138
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/74 (31%), Positives = 41/74 (55%)
Frame = -1
Query: 467 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
+S G + ++FVGGL + T+ ++R+ ++G + N+ D TG S+G+AF V+
Sbjct: 364 SSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Query: 287 KAPESIDKVMALVN 246
+ P D A +N
Sbjct: 424 QDPSVTDIACAALN 437
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/71 (36%), Positives = 36/71 (50%)
Frame = -1
Query: 458 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 279
EA + L+V L TD +LR+HF +G I S V DP +G SRG F+ F P
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTP 377
Query: 278 ESIDKVMALVN 246
E + + +N
Sbjct: 378 EEATRAITEMN 388
Score = 38.3 bits (85), Expect = 0.004
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE----SIDKV 261
+F+ L K L + F A+G I S V DP +G+S+G+ F+ + E +IDK+
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 260 MA-LVNTPSTTRK*TQRRLKHDMG----RFLSEDSAVKSQMMKSE---TSFSEFGTILEV 105
L+N +L+ D +F + S+ + E F EFG
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSC 253
Query: 104 EMPFDKTKNQRKGFCFITFES 42
+ D + + KGF F+ FE+
Sbjct: 254 VIMRD-GEGKSKGFGFVNFEN 273
Score = 34.7 bits (76), Expect = 0.052
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
++V LS +D+EL FG +G S + D G+S+GF F+ F+ + + + +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 248 N 246
N
Sbjct: 285 N 285
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 282
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
Score = 35.1 bits (77), Expect = 0.039
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = -1
Query: 149 KSET---SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
K+ET +F ++G I + + FDK + KG+ FI ++S + LK P++
Sbjct: 152 KTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQK 203
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 282
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
Score = 35.1 bits (77), Expect = 0.039
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = -1
Query: 149 KSET---SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
K+ET +F ++G I + + FDK + KG+ FI ++S + LK P++
Sbjct: 152 KTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQK 203
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 282
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
Score = 35.1 bits (77), Expect = 0.039
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = -1
Query: 149 KSET---SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
K+ET +F ++G I + + FDK + KG+ FI ++S + LK P++
Sbjct: 152 KTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQK 203
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
KL++GGLS T + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 251 VN 246
+N
Sbjct: 92 MN 93
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = -1
Query: 467 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 93
Query: 287 KA 282
K+
Sbjct: 94 KS 95
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = -1
Query: 467 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 123
Query: 287 KA 282
K+
Sbjct: 124 KS 125
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D +FVG L+ + TD L++ F Y + V TDP+TGRS+G+ F+ F ++
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 260 MALVN 246
MA +N
Sbjct: 175 MAEMN 179
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
++ R L++G L + + L F GE+ S+ V + TG+ G+ FI F + + ++
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 263 VMALVN 246
+ N
Sbjct: 81 TLQTYN 86
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
+ + KLFVG LSW T + L F G++ V D +TGRSRG+ F+ + + ++
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 263 VM 258
+
Sbjct: 234 AL 235
Score = 31.9 bits (69), Expect = 0.36
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
KL+ G L + L + E + V + +TG+SRGFAF+ E + ++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = -1
Query: 485 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 318
G N A A G+ +D +FVG LS E TD L D F A+ V D TG
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTG 186
Query: 317 RSRGFAFIVFK 285
RSRGF F+ F+
Sbjct: 187 RSRGFGFVSFR 197
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
SFS F + + + +D+ + +GF F++F ++Q
Sbjct: 167 SFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQ 200
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = -1
Query: 485 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 306
G S+ + + + L+V GLS TDK+L HF G++ S + +P T SRG
Sbjct: 55 GRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 114
Query: 305 FAFIVFKAPESIDKVMALVN 246
FAF+ + + ++ + +N
Sbjct: 115 FAFVTMSSLKDAERCIKYLN 134
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 49.2 bits (112), Expect = 2e-06
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Frame = -1
Query: 461 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI---- 294
AE P ++ KLFVG L+++ + L F G +E V + T +SRGF F+
Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
Query: 293 VFKAPESIDKV--------MALVN--TPSTTRK*TQRRLKHDMGRFLSEDSAVKSQMMKS 144
V +A +++K + VN P +R R+ R + +
Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 260
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 18
E FSE G ++E + +D+ + +GF F+T +N+ +
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Score = 44.4 bits (100), Expect = 6e-05
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
+++VG L W+ + L F +G++ V D TGRSRGF F+ + +++ ++
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 251 VN 246
++
Sbjct: 305 LD 306
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 49.2 bits (112), Expect = 2e-06
Identities = 44/140 (31%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
L+ G L + T+ L D F + S+ V D N RS G+A+I F P + M +
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 248 N-TPSTTR--------K*TQRRLKHDMGRFLSEDSAVKSQMMKSETSFSEFGTILEVEMP 96
N TP R + RL F+ A ET FS FGTIL ++
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFET-FSSFGTILSCKVA 168
Query: 95 FDKTKNQRKGFCFITFESEQ 36
D T + KG+ F+ FE E+
Sbjct: 169 MDVT-GRSKGYGFVQFEKEE 187
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
L++ L D++L++ F YG + S V +P G SRGF F+ + PE + ++ +
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEM 392
Query: 248 NTPSTTRK 225
N RK
Sbjct: 393 NGKMIGRK 400
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
+F+ L +K L + F ++G I S V D TGRS+G+ F+ F+ ES + +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 248 N 246
N
Sbjct: 197 N 197
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
++VGG+ ++ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
FS++G I++V + DK + KGF F+ +E ++
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQR 88
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 48.8 bits (111), Expect = 3e-06
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 13/144 (9%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
L+VG LS + T+K+L D F + S+++ + TG+S +A+I F +P S M +
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 248 NTPSTTRK*T-----------QRRLKHDMGRFLSE--DSAVKSQMMKSETSFSEFGTILE 108
N K +RR + + DS++ S + E F FG+IL
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCL--ERMFCPFGSILS 140
Query: 107 VEMPFDKTKNQRKGFCFITFESEQ 36
++ + Q KGF F+ F++EQ
Sbjct: 141 CKVV--EENGQSKGFGFVQFDTEQ 162
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/74 (37%), Positives = 37/74 (50%)
Frame = -1
Query: 479 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 300
++D +A A G D ++V L TD L F YG + S+ V D GRSRGF
Sbjct: 188 NKDERAAMA-GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFG 245
Query: 299 FIVFKAPESIDKVM 258
F+ F PE+ K M
Sbjct: 246 FVNFCNPENAKKAM 259
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
L+V LS + LR+ FG YG+I S V N GRS+GF F+ F E + +
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYL 364
Query: 248 N 246
N
Sbjct: 365 N 365
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 48.4 bits (110), Expect = 4e-06
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = -1
Query: 518 QPAYGNAENGGGDSQDHNS-AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 342
+P + G S+ S E PG L+V GLS TDK+L HF G++ S
Sbjct: 46 RPVSPSRSRGRSRSRSRGSEVENPGTT----LYVTGLSTRVTDKDLEAHFAKEGKVASCF 101
Query: 341 VKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
+ +P T SRGFAF+ + + ++ + +N
Sbjct: 102 LVMEPRTRVSRGFAFVTMSSLKDAERCIKYLN 133
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 48.4 bits (110), Expect = 4e-06
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Frame = -1
Query: 464 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
+AEA + L+VG L + L D F + ++ V D T RS G+A++ F
Sbjct: 35 AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFA 93
Query: 284 APESIDKVMALVN-TPSTTR--------K*TQRRLKHDMGRFLSE-DSAVKSQMMKSETS 135
PE + M +N P R + RL F+ D+++ ++ + +
Sbjct: 94 NPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYE--T 151
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
FS FGTIL ++ D + KG+ F+ FE E+
Sbjct: 152 FSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEE 183
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = -1
Query: 476 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 297
QD +E+ ++V L E TD EL+ FG YG+I S V D +G SR F F
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGF 269
Query: 296 IVFKAPES 273
+ F +PE+
Sbjct: 270 VNFVSPEA 277
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
L++ L D++L++ F YG + S V + + G SRGF F+ + PE M +
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEM 388
Query: 248 NTPSTTRK 225
N RK
Sbjct: 389 NGKMIGRK 396
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
D + K++V GL W T + L +F +GEI V D T RS+GF F+ F+ ES
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVES 62
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = -1
Query: 452 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
P + LFV GLS TT + LR F +GE+ V TD +G S+GF F+ + E
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 272 IDKVMA 255
K +A
Sbjct: 110 SAKGIA 115
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 140 TSFSEFGTILEVEMPFDKTKNQRKGFCFITF 48
T+F++FG + + ++ D+ KGF F+ +
Sbjct: 74 TAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = -1
Query: 500 AENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTD 330
AE G SQD + SA D R ++VG + + T +E++ HF + G + + + TD
Sbjct: 78 AEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD 137
Query: 329 PNTGRSRGFAFIVFKAPESIDKVMAL 252
G+ +GFA++ F E++ + L
Sbjct: 138 -KFGQPKGFAYVEFVEVEAVQNSLIL 162
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 47.6 bits (108), Expect = 7e-06
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 14/156 (8%)
Frame = -1
Query: 452 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
P ++ KLFVG L ++ + L F G +E V + +T +SRGF F+ E
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 272 IDKVMALVNT--------------PSTTRK*TQRRLKHDMGRFLSEDSAVKSQMMKSETS 135
+K + N+ P +R Q R+ R + + E
Sbjct: 167 AEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERL 226
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 27
FSE G +++ + D+ + +GF F+ +E VN
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
+++VG L W+ L F +G++ V +D TGRSRGF F+ ++ +A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 251 VN 246
++
Sbjct: 268 LD 269
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
KL+V GLS+ TT+ LRD F +G + +N+ D R +GFAF+ ++ E K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135
Score = 37.9 bits (84), Expect = 0.006
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
+F +FG ++ + M DK N+ KGF F+ +E+E+
Sbjct: 96 TFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEE 129
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
KLF+GGLS+ TT++ L + F G++ + D + RS+GF F+ F + + K +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 251 VN 246
N
Sbjct: 95 FN 96
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFES 42
+FS+ G ++E ++ D+ ++ KGF F+TF S
Sbjct: 53 AFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 84
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 255
KL+VGG+ +++T+ E+R +F + G I ++ K P G G AFI F + + +A
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALA 220
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/64 (29%), Positives = 38/64 (59%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
D ++++G L+W+TT++++R F I S+ + + TG +G+A + FK +S+
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFK--DSVSV 315
Query: 263 VMAL 252
+AL
Sbjct: 316 AIAL 319
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = -3
Query: 192 KIFVGGLSSEISDDEIRNFFQ 130
K++VGG+ + ++DEIR++F+
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFR 182
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 47.2 bits (107), Expect = 9e-06
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Frame = -1
Query: 482 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 303
++++ +A P + R++++G + T+++L +G +E + V D +GRSR F
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 302 AFIVFKAPESIDKVMALVNTPSTTRK-----*TQRRL--KHDMGRFLSEDSAVKSQMMK- 147
F K+ E + V+ +N + + T++ + D+ SEDSA K
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKV 179
Query: 146 -------------SETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 30
E FSE G ++ ++ ++ GF F+TF SE+ V
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDV 231
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
D K++VG L+ T + L + F G++ S V P T +S GF F+ F + E ++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 263 VMALVN 246
+ +N
Sbjct: 234 AIVALN 239
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = -1
Query: 506 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 327
G + G + G +++VG LSW D L F G++ V D
Sbjct: 180 GPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDR 239
Query: 326 NTGRSRGFAFIVFKAPESIDKVM 258
++GRS+GF F+ + + + + +
Sbjct: 240 DSGRSKGFGFVTYDSSQEVQNAI 262
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
D KLFVG L + +L F + G +E + V D TGRSRGF F+ + ++
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVE 146
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = -1
Query: 152 MKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 12
M E+ FSE G ++E + +D+ + KGF F+T++S Q V + +K+
Sbjct: 218 MALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
K+FVGGLS T + L++ FG++G+I V D +G SRGF F+ + + E + M
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAM 94
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
+F FG I++ + D+ +GF F+T++S +V N+ ++
Sbjct: 55 AFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 46.8 bits (106), Expect = 1e-05
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
++F+GGL + +++LRD GEI + + D ++G S+G+AF+ FK + K +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 251 VNTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQMMKSETSFSEFGTILE-VEMPFDKTKNQ 75
+++ K + L R + + + G +E +E+ D T
Sbjct: 177 LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTT 236
Query: 74 R-KGFCFITF 48
R +GF F+ +
Sbjct: 237 RNRGFAFVLY 246
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = -1
Query: 479 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 300
S +H++A A + L+V + T+ ++L++ F +GE+ I T P G R F
Sbjct: 281 SPEHSAAAA----QVKALYVKNIPENTSTEQLKELFQRHGEVTKI--VTPPGKGGKRDFG 334
Query: 299 FIVFKAPESIDKVM 258
F+ + S K +
Sbjct: 335 FVHYAERSSALKAV 348
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
LFV G+S+ +T++ L F YG++ ++V D R +GFA++ F + E +K + +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 248 N 246
N
Sbjct: 83 N 83
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/34 (38%), Positives = 26/34 (76%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
+FS++G +L+V++ DK + + KGF ++TF S++
Sbjct: 40 AFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKE 73
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = -1
Query: 464 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVF 288
S + D LF+G L + +K L D F A+G I S + DP+TG SRGF FI +
Sbjct: 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Query: 287 KAPESID 267
+ E+ D
Sbjct: 162 DSFEASD 168
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Frame = -1
Query: 440 DDRKLFVGG----LSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
D++K+FV G LS + LR+HF + GEI++++V D +TG S+G A++ F E
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS--EG 456
Query: 272 IDKVMAL 252
+K + L
Sbjct: 457 KEKALEL 463
Score = 36.3 bits (80), Expect = 0.017
Identities = 18/76 (23%), Positives = 31/76 (40%)
Frame = -1
Query: 452 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
P + LF LS+ ++ + F GE+ + T+ + G RGF + F + E
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 272 IDKVMALVNTPSTTRK 225
K + P R+
Sbjct: 351 AQKALEFHGRPLLGRE 366
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = -1
Query: 473 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 294
+ N EA + L+V L +D++L++ F +G + S V DPN G S+G F+
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFV 177
Query: 293 VFKAPESIDKVMA 255
F PE + M+
Sbjct: 178 AFATPEEATEAMS 190
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
++V L+ TTD +L++ FG YG+I S V D G+S+GF F+ F+ + + + +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 89
Query: 248 N 246
N
Sbjct: 90 N 90
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = -1
Query: 494 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTD----KELRDHFGAYGEIESINVKTDP 327
N G ++ N R ++V G S + KELR HF GE+ ++V TD
Sbjct: 459 NERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDR 518
Query: 326 NTGRSRGFAFI 294
TG SRGFA+I
Sbjct: 519 ETGASRGFAYI 529
Score = 35.1 bits (77), Expect = 0.039
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 20/151 (13%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 255
+ LF G LS++ ++ + F GE+ + + + + G +G+ I F +PE K +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSF-DDGSFKGYGHIEFASPEEAQKALE 442
Query: 254 --------------LVNTPSTTRK*TQ-RRLKHDMGRFL---SEDSAVKSQMMKSE--TS 135
L N T R R+ + R + S++ +K E +
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFES 42
FS+ G + V +P D+ +GF +I S
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYIDLTS 533
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
++V LS TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 248 N 246
N
Sbjct: 286 N 286
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = -1
Query: 473 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 294
+ S++ + D L+V L TD++LR+ F +G I S V DP +G S+G F+
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFV 373
Query: 293 VFKAPESIDKVMALVN 246
F A +V+ +N
Sbjct: 374 AFSAASEASRVLNEMN 389
Score = 45.6 bits (103), Expect = 3e-05
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 10/174 (5%)
Frame = -1
Query: 506 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 327
G GGGD H + + L+VG L + TD +L D+F ++ S+ V D
Sbjct: 30 GIGVGGGGDGVTHGALCS--------LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDA 81
Query: 326 NTGRSRGFAFIVFKAPESIDKVMALVNTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQMMK 147
T S G+ ++ + + +K M +N K R+ + + S V + +K
Sbjct: 82 ATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGK--MIRITYSSRDSSARRSGVGNLFVK 139
Query: 146 S----------ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 15
+ +FS GTI+ ++ D Q +G+ F+ F++E + ++
Sbjct: 140 NLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIE 192
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = -1
Query: 458 EAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 282
E DD +R LF+ L ++ T +E++ F +GE+ES+++ T R G AF+ FK
Sbjct: 552 ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
Query: 281 PESIDKVMALVNTPS 237
++ ++ +T S
Sbjct: 612 ADASVAAISAADTAS 626
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = -1
Query: 488 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 309
G + ++ E + V GL + T+ +L + F G + + T+ + R
Sbjct: 2 GKNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHR 61
Query: 308 GFAFIVFKAPESIDKVMALVN 246
GFAF+ F E +++ + L N
Sbjct: 62 GFAFVKFALQEDVNRAIELKN 82
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
KL + L ++ +++ F A G + + + + TG +GFAF+ F
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 143 ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 27
E +FSE G + + +K ++ +GF F+ F ++ VN
Sbjct: 37 EEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVN 75
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 282
+++VG LS TTD LR+ F YG + V D T RSRGF F+ + +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -1
Query: 467 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 300
N A A G+ +D +FVG LS E TD L F + V D TGRSRGF
Sbjct: 129 NWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFG 188
Query: 299 FIVFK 285
F+ F+
Sbjct: 189 FVSFR 193
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
SFS F + + + +D+ + +GF F++F ++Q
Sbjct: 163 SFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
+LFV LS TTD+ LR F +G+I+ + D T R +GF FI F + + K +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 12
FS FG I E + D + KGF FITF+SE LK+
Sbjct: 27 FSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 255
R +FV + + T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 516 RTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
Query: 254 LVNTPSTTR 228
L T +R
Sbjct: 576 LDGTSFMSR 584
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = -1
Query: 425 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
FV GL +T +K+L D F +G + + D +TG+SR F F+ F+ +S+ + +++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 245 TPSTTRK 225
+ K
Sbjct: 70 VEESRSK 76
Score = 34.7 bits (76), Expect = 0.052
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 18
FS+FG +++ ++ +D+ + + F F+TFE E+ + D +
Sbjct: 27 FSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = -1
Query: 485 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 306
G + + + E+P + + L+VGGL+ ++++RD F A+GEIESI + D +
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KA 264
Query: 305 FAFIVFKAPESIDK 264
AF+ + + E +K
Sbjct: 265 CAFVTYTSREGAEK 278
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/63 (30%), Positives = 36/63 (57%)
Frame = -1
Query: 440 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D R +FVG + + T +E++ HF G + + + TD G+ +GFA++ F E++ +
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEA 148
Query: 260 MAL 252
+ L
Sbjct: 149 LQL 151
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D +FVG L+ E TD L D F YG ++ V D TGRS+G+ F+ F +
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 260 MALVN 246
M +N
Sbjct: 213 MTEMN 217
Score = 42.7 bits (96), Expect = 2e-04
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 16/165 (9%)
Frame = -1
Query: 485 GDSQDHNSAEAPGRDDDRK-LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 309
G Q ++ PG D K L++G L + + F GE S V + TG+S
Sbjct: 42 GQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSE 101
Query: 308 GFAFIVFKAPESIDKVMALVN---TPSTTRK*TQRRLKHDMG--RFLSE---------DS 171
G+ FI F + ++V+ N PST + + G RF +E D
Sbjct: 102 GYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDL 161
Query: 170 AVK-SQMMKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 39
A + + M S+T + +G++ ++ D+T + KG+ F+ F E
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
Score = 38.3 bits (85), Expect = 0.004
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = -1
Query: 476 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 300
Q+ A A D ++ +FVGGL TD EL+ FG +GE+ ++VK P G+ GF
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP--GKRCGFV 300
Query: 299 FIVFKAPESIDKVMALVN 246
KA S + ++++N
Sbjct: 301 QYANKA--SAEHALSVLN 316
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -3
Query: 189 IFVGGLSSEISDDEIRNFF 133
IFVGGL + ++DDE+++ F
Sbjct: 262 IFVGGLDANVTDDELKSIF 280
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/68 (29%), Positives = 39/68 (57%)
Frame = -1
Query: 449 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 270
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 269 DKVMALVN 246
D A +N
Sbjct: 414 DIACAALN 421
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/68 (29%), Positives = 39/68 (57%)
Frame = -1
Query: 449 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 270
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 269 DKVMALVN 246
D A +N
Sbjct: 414 DIACAALN 421
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/68 (29%), Positives = 39/68 (57%)
Frame = -1
Query: 449 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 270
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 269 DKVMALVN 246
D A +N
Sbjct: 414 DIACAALN 421
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/61 (32%), Positives = 39/61 (63%)
Frame = -1
Query: 470 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 291
+N A G D + LFV L++E+++ +++ F +YG I+ +++ TD T + +G+AFI
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 290 F 288
+
Sbjct: 186 Y 186
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.8 bits (101), Expect = 5e-05
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 3/141 (2%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 255
R +FVG + ++ T+++LR+ G G + S + TD TG+ +G+ F +K E+ + A
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET--ALSA 66
Query: 254 LVNTPSTTRK*TQRRL---KHDMGRFLSEDSAVKSQMMKSETSFSEFGTILEVEMPFDKT 84
N S Q R+ ++D G + D + + S T+ +E + ++ P D
Sbjct: 67 RRNLQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTE--SQKQIGGPVDSN 124
Query: 83 KNQRKGFCFITFESEQVVNDL 21
+Q G T + + L
Sbjct: 125 MHQPVGLHLATTAASVIAGAL 145
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.8 bits (101), Expect = 5e-05
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = -1
Query: 485 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESI----NVKTD 330
G N A A G+ +D +FVG LS E TD L D F A+ S V D
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186
Query: 329 PNTGRSRGFAFIVFK 285
TGRSRGF F+ F+
Sbjct: 187 QKTGRSRGFGFVSFR 201
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/86 (23%), Positives = 43/86 (50%)
Frame = -1
Query: 482 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 303
+ + H+ + + ++FVG L ++++L+ FG GE+ + + +P T +S+G
Sbjct: 198 EEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGS 257
Query: 302 AFIVFKAPESIDKVMALVNTPSTTRK 225
AF+ F E + + + +P K
Sbjct: 258 AFLRFATVEQAKRAVKELKSPMINGK 283
Score = 33.9 bits (74), Expect = 0.090
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 255
+ +F+ GL ++ +RD YG++E + + + + R + F F+ F E+
Sbjct: 391 KTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAK 450
Query: 254 LVN 246
+N
Sbjct: 451 FIN 453
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -1
Query: 440 DDRKLFVGGLSWETTDKELRDHFGAYG--EIESINVKTDPNT-GRSRGFAFIVFKA 282
D+ LFVG + T + LR+ YG ++ I + D N +RG+AF+ F +
Sbjct: 292 DNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSS 347
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Frame = -1
Query: 479 SQDHNSAEAPGRDDDRK------LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 318
S+D S + GR ++ + V G+ ET ++++ + FG +GEI+++N+ D +G
Sbjct: 74 SRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSG 133
Query: 317 RSRGFAFIVFKAPESIDKVMALVN 246
+G+A I ++ E ++ +N
Sbjct: 134 YVKGYALIEYEKKEEAQSAISAMN 157
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.4 bits (100), Expect = 6e-05
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -1
Query: 467 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 300
N A A G+ +D +FVG LS E TD L F Y V D TGRSRGF
Sbjct: 124 NWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 299 FIVFK 285
F+ F+
Sbjct: 184 FVSFR 188
Score = 30.7 bits (66), Expect = 0.84
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = -1
Query: 482 DSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGE--IESINVKTDPNTGRS 312
D +D + EAP + ++VG L+ E + +L HF + G IE + V+ R
Sbjct: 243 DGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQ------RD 296
Query: 311 RGFAFIVFKAPESIDKVMALVNTPS 237
+GF F+ + + + NT S
Sbjct: 297 KGFGFVRYSTHVEAALAIQMGNTHS 321
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = -1
Query: 521 RQPAYGNAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIE 351
+QP G + G DH S + R KLFVG + T++E+R +F +G +
Sbjct: 90 QQPLSG--QKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVL 147
Query: 350 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVNTPST 234
+ + D TG+ +G F+ + + D+ + ++ T
Sbjct: 148 EVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQIT 186
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
KLFVG L+ + T+KE+ + F +G +E + + D +SRG F+ + + E+ +
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDG 270
Query: 251 VNTPSTTR 228
+N T R
Sbjct: 271 LNGTYTMR 278
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
F + G +LEV + DK Q++G CF+ + + +
Sbjct: 140 FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = -1
Query: 521 RQPAYGNAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIE 351
+QP G + G DH S + R KLFVG + T++E+R +F +G +
Sbjct: 90 QQPLSG--QKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVL 147
Query: 350 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVNTPST 234
+ + D TG+ +G F+ + + D+ + ++ T
Sbjct: 148 EVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQIT 186
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
KLFVG L+ + T+KE+ + F +G +E + + D +SRG F+ + + E+ +
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDG 270
Query: 251 VNTPSTTR 228
+N T R
Sbjct: 271 LNGTYTMR 278
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
F + G +LEV + DK Q++G CF+ + + +
Sbjct: 140 FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 44.0 bits (99), Expect = 8e-05
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = -1
Query: 485 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 306
G + + + E+P R L+VGGL+ ++++RD F A+GEIESI + + +
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KA 264
Query: 305 FAFIVFKAPESIDK 264
AF+ + E +K
Sbjct: 265 CAFVTYTTREGAEK 278
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/132 (21%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMA 255
++++GG+ + T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + + +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 254 LVNTPSTTR--K*TQRRLKHDMGRFLSEDSAVKSQMMKSETSFSEFGTILEVEMPFD-KT 84
L NT + K + + KH + + ++S + K+ I VE+P + +
Sbjct: 153 LNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGPGVQI--VELPKEPQN 210
Query: 83 KNQRKGFCFITF 48
+ +GF FI +
Sbjct: 211 MGRNRGFAFIEY 222
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 122 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 12
G + EV + +K KG+ F+TF S+ + + + T
Sbjct: 116 GEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = -1
Query: 446 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
R+D+ + V LS +T + +L + F +G + + V D TG SRGF F+ F + E
Sbjct: 209 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
Query: 266 KVMALVN 246
+ + +N
Sbjct: 269 RAINKLN 275
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 260 MALVN 246
M +N
Sbjct: 256 MTEMN 260
Score = 41.9 bits (94), Expect = 3e-04
Identities = 39/180 (21%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Frame = -1
Query: 527 YHRQPAYGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIES 348
YH+ P + + + ++ N+ +++ ++VG L + L F + E E
Sbjct: 74 YHQYPNHHHLHHQSRGNKHQNAFNG----ENKTIWVGDLHHWMDEAYLNSSFASGDEREI 129
Query: 347 INVKT--DPNTGRSRGFAFIVFKAPESIDKVMALVN---TPSTTR---------K*TQRR 210
++VK + N G S G+ F+ F++ + DKV+ N P+T + ++R
Sbjct: 130 VSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKR 189
Query: 209 LKH---DMGRFLSEDSAVKSQMMKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 39
L++ D+ F+ + S S + ET ++ ++ ++ D + KG+ F+ F E
Sbjct: 190 LENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 260 MALVN 246
M +N
Sbjct: 256 MTEMN 260
Score = 41.9 bits (94), Expect = 3e-04
Identities = 39/180 (21%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Frame = -1
Query: 527 YHRQPAYGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIES 348
YH+ P + + + ++ N+ +++ ++VG L + L F + E E
Sbjct: 74 YHQYPNHHHLHHQSRGNKHQNAFNG----ENKTIWVGDLHHWMDEAYLNSSFASGDEREI 129
Query: 347 INVKT--DPNTGRSRGFAFIVFKAPESIDKVMALVN---TPSTTR---------K*TQRR 210
++VK + N G S G+ F+ F++ + DKV+ N P+T + ++R
Sbjct: 130 VSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKR 189
Query: 209 LKH---DMGRFLSEDSAVKSQMMKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 39
L++ D+ F+ + S S + ET ++ ++ ++ D + KG+ F+ F E
Sbjct: 190 LENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK--APESIDKVMA 255
+FVGGL TD++L+ F +GEI S+ + G+ GF V + A E+++K+
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP----VGKGCGFVQFVNRPNAEEALEKLNG 361
Query: 254 LVNTPSTTR 228
V T R
Sbjct: 362 TVIGKQTVR 370
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = -1
Query: 452 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +K +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 272 IDKVM 258
K +
Sbjct: 70 AHKAV 74
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = -1
Query: 452 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 273
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +K +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 272 IDKVM 258
K +
Sbjct: 70 AHKAV 74
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFG-AYGEIESINVKTDPNTGRSRGFAFIVF 288
D +FVG LS + TD L + F Y ++S V D NTGRS+G+ F+ F
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Score = 40.3 bits (90), Expect = 0.001
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 15/161 (9%)
Frame = -1
Query: 476 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 297
Q H + + DD + L+VG L + L F GE+ S+ V + T +S G+ F
Sbjct: 94 QQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGF 153
Query: 296 IVFKAPESIDKVM------ALVNTPSTTR-------K*TQRRLKH--DMGRFLSEDSAVK 162
+ F + + ++V+ + N+ R +R +++ D+ F+ + S
Sbjct: 154 VEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV 213
Query: 161 SQMMKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 39
+ ++ ET + ++ ++ D + KG+ F+ F E
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -1
Query: 494 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 318
+G S + S ++ G + +FVGG+ + D++LR F +GE+ S+ + G
Sbjct: 302 HGSNGSMGYGS-QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 261
++V ++ T++ELR HF G I S + D G+S+GF F+ F P E+ID V
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAV 361
Score = 39.5 bits (88), Expect = 0.002
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
L++ L + ++ LR+ F +G+I S+ + D N RG+AF+ F PE + V
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 248 NTP---------STTRK*TQR--------RLKHDMGRFLSEDSAVKSQMMKSETS----- 135
N +K +R + KH+ + +++ S + + + +
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 134 --FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 12
FS+ GTI ++ D+ K + KGF F+ F + + D +KT
Sbjct: 322 KHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKT 363
Score = 38.7 bits (86), Expect = 0.003
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Frame = -1
Query: 464 SAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 291
S AP R+ +FV L T+ L+D F +G I S V T + G+SRG+ F+
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQ 158
Query: 290 FKAPESIDKVMALVNTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQ------MMKS----- 144
F+ ++ + +N+ K + +G+F+ + VK + MK+
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADK------EIYVGKFMKKTDRVKPEEKYTNLYMKNLDADV 212
Query: 143 -----ETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
F+EFG I+ + + D+ + R G+ F+ F++ +
Sbjct: 213 SEDLLREKFAEFGKIVSLAIAKDENRLCR-GYAFVNFDNPE 252
Score = 29.1 bits (62), Expect = 2.6
Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 8/147 (5%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
L+VG L T+ L D F + + S+ + D ++GRS + + F + + + +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 248 NTPSTTRK*TQ--------RRLKHDMGRFLSEDSAVKSQMMKSETSFSEFGTILEVEMPF 93
N K + ++ +G ++ + F +FG I+ ++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA- 144
Query: 92 DKTKNQRKGFCFITFESEQVVNDLLKT 12
+ +G+ F+ FE E + ++T
Sbjct: 145 TLEDGKSRGYGFVQFEQEDAAHAAIQT 171
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D +FVG L+ + +D L + F G Y ++ V D NTGRS+G+ F+ F +
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Query: 260 MALVN 246
M +N
Sbjct: 272 MTEMN 276
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/74 (24%), Positives = 38/74 (51%)
Frame = -1
Query: 467 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
N + + G ++ +FVGGL + T+++L F +GE+ S+ + +G F+ F
Sbjct: 316 NGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV------GKGCGFVQF 369
Query: 287 KAPESIDKVMALVN 246
+S ++ + +N
Sbjct: 370 ANRQSAEEAIGNLN 383
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = -1
Query: 479 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 300
SQ+ + E + RKLFV L W + ++ + FG G + ++ + + G++RGFA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFA 138
Query: 299 FIVFKAPE 276
F+ + E
Sbjct: 139 FVTMASGE 146
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 455 APGRDDDRKLFVGGLSWETTDKELRDHFGA--YGEIESINVKTDPNTGRSRGFAFIVFKA 282
APG D KL+V L+W+ LR+ F A + + + V DP GRS G+ F+ F
Sbjct: 188 APG-DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFAT 245
Query: 281 PESIDKVMALVN 246
E + + +N
Sbjct: 246 REEAENAITKLN 257
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = -1
Query: 458 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTD 330
E P + + L+VGGL+ ++++ DHF AYGE+ESI V +
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 276
L+VG L+ ETT+ +L + FG YG+I+ I V + SRGFAFI ++ E
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYRHVE 64
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D +FVG L+ + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 260 MALVN 246
M +N
Sbjct: 258 MTEMN 262
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK--APESIDKVMA 255
+FVGGL TD++L+ F +GEI S+ + G+ GF V + A E+++K+
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP----VGKGCGFVQFVNRPNAEEALEKLNG 363
Query: 254 LVNTPSTTR 228
V T R
Sbjct: 364 TVIGKQTVR 372
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
+++G +S+ TT+++L + F GEI+ I + D NT GF F++F + E + + +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 248 N 246
+
Sbjct: 96 S 96
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 270
LFVG LS TT+ LR+ YG I+++ + TG SRG+ F+ ++ + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEM 118
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 279
LFVG L W TTD EL YG ++ + + +G+S+G+ + F P
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.1 bits (92), Expect = 6e-04
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 263 -VMALVNTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQMMKSETS-------FSEFGTILE 108
V A N + + ++K+ G + + M+ S FS++GTI +
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 107 VEMPFDKTKNQRKGFCFITFES-EQVVN 27
+++ + KG F+ +E+ EQ V+
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYETKEQAVS 161
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
LF+ + E D+EL F ++G + S V D TG S+ F + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.1 bits (92), Expect = 6e-04
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 263 -VMALVNTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQMMKSETS-------FSEFGTILE 108
V A N + + ++K+ G + + M+ S FS++GTI +
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 107 VEMPFDKTKNQRKGFCFITFES-EQVVN 27
+++ + KG F+ +E+ EQ V+
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYETKEQAVS 161
Score = 34.3 bits (75), Expect = 0.068
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
LF+ + E D+EL F ++G + S V D TG S+ F F+ + + + + ++
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 248 NTPSTTRK*TQRRLKHD 198
N K + +LK D
Sbjct: 411 NGRHLGGKKLKVQLKRD 427
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 41.1 bits (92), Expect = 6e-04
Identities = 27/118 (22%), Positives = 54/118 (45%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
L+V L + T+ ++ F +G++ + V D +T +SRG AF+++ + E K +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 248 NTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQMMKSETSFSEFGTILEVEMPFDKTKNQ 75
+ + + D GR +K ++ K ++ E G E + ++ KNQ
Sbjct: 119 DAKILNGRKLTVSIAADNGR---ASEFIKKRVYKDKSRCYECGD--EGHLSYECPKNQ 171
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = -1
Query: 485 GDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 318
G +QD S A G++ D R ++VG + + T +E++ HF G + + + D G
Sbjct: 68 GATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFG 126
Query: 317 RSRGFAFIVFKAPESIDKVMAL 252
+ +GFA++ F E++ + + L
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQL 148
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = -1
Query: 485 GDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 318
G +QD S A G++ D R ++VG + + T +E++ HF G + + + D G
Sbjct: 68 GATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFG 126
Query: 317 RSRGFAFIVFKAPESIDKVMAL 252
+ +GFA++ F E++ + + L
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQL 148
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -1
Query: 485 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 306
G + ++ R D+ + V LS +T +L + F +G + +V D T SRG
Sbjct: 157 GADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRG 216
Query: 305 FAFIVFKAPESIDKVMALVN 246
F F+ F + E + + +N
Sbjct: 217 FGFVSFVSREDAQRAINKLN 236
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
DD ++VGGL ++ T++ +R F YG + ++ + D + R + + F+ F S D
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSAD 61
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -1
Query: 473 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAF 297
+ AE P + +FVG L+ + TD L + F A Y ++ V D TGRS+G+ F
Sbjct: 164 ERRQAEGP----EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Query: 296 IVFKAPES 273
+ F A ES
Sbjct: 220 VRF-ADES 226
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -1
Query: 518 QPA-YGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 342
QPA Y N + G+S N+ +FVG + T+ +L+ FG +GE+ +
Sbjct: 259 QPASYQNTQGNSGESDPTNTT----------IFVGAVDQSVTEDDLKSVFGQFGELVHVK 308
Query: 341 VKTDPNTG 318
+ G
Sbjct: 309 IPAGKRCG 316
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/74 (32%), Positives = 39/74 (52%)
Frame = -1
Query: 479 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 300
+QDH SA + V GLS ++T+++L +G + + V + N+G SRGFA
Sbjct: 288 NQDHFSATPSAT-----VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Query: 299 FIVFKAPESIDKVM 258
FI F ++ +M
Sbjct: 343 FIDFPTVDAARTMM 356
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
L V GL + ++ LR F + I+ + + D T SRGFAF+ F + E K +
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 248 NTPSTTR 228
N + R
Sbjct: 520 NRTALER 526
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.9 bits (89), Expect = 0.001
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Frame = -1
Query: 461 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 284 APESIDKVM-ALVNTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQMMK---SETS----FS 129
E DKV+ + N + + ++K+ G + + M+ SET FS
Sbjct: 62 TREDADKVINSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSLFS 121
Query: 128 EFGTILEVEMPFDKTKNQRKGFCFITFESEQ 36
E+GTI ++++ + KG F+ +ES++
Sbjct: 122 EYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 151
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + + +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 248 NTPSTTRK*TQRRLKHDMGR 189
N + K + +LK D G+
Sbjct: 392 NGCQLSGKKLKVQLKRDNGQ 411
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 140 TSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 12
T F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 30 TLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
LFVG L W TTD E+ YG ++ I + +G+S+G+ + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 39.1 bits (87), Expect = 0.002
Identities = 35/174 (20%), Positives = 73/174 (41%), Gaps = 12/174 (6%)
Frame = -1
Query: 488 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 309
GG ++ P ++ L++G + + E+ F +G ++ + V + TG+S+
Sbjct: 42 GGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
Query: 308 GFAFIVFKAPESIDKVMALVNTPSTTRK*TQ------RRLKHDMGR-----FLSEDSA-V 165
F FI F+ PE + +N + +K ++ R F DS +
Sbjct: 102 HFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQI 161
Query: 164 KSQMMKSETSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 3
+ + + E + E +L+ + D+ + +R I +E ++V + PKR
Sbjct: 162 ERRQLNKERTLEEHRKMLQKIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKR 215
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 276
K+ V L + T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = -1
Query: 479 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 300
S+DH S+ G L + L + +LRD F +G ++ I + + TG RGF
Sbjct: 38 SRDHESSGPSG------LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 299 FIVFKAPESIDKVMALVN 246
F+ ++ E + M +N
Sbjct: 92 FVKYRYAEDAAEAMKRMN 109
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 38.7 bits (86), Expect = 0.003
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVM 258
R +FVG +ET +L F YG ++ +++K+ G+AF+ F+ ++ D +
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFEDERDAEDAIR 53
Query: 257 ALVNTP--STTRK*TQRRLKHDMGRFLSEDSAVKSQMMKSETSF-SEFGTILEVE----- 102
L N P R+ + K + GR D+ S + ++T F F I E
Sbjct: 54 KLDNFPFGYEKRRLSVEWAKGERGR-PRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEK 112
Query: 101 --MPFDKTKNQ--RKGFCFITFESEQVVNDLLKTPKR 3
P+ K N R+ F F+ FE+++ L+ +R
Sbjct: 113 HFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQR 149
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = -1
Query: 515 PAYGNAENGGGDSQDHNSAEAPGRDDDR--KLFVGGLSWETTDKELRDHFGAYGEIESIN 342
P + + GG + S A D KL+V +S T+ ++R F YG + I
Sbjct: 81 PPFPPSPCGGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEII 140
Query: 341 VKTDPNTGRSRGFAFIVFKAPESIDKVMALVNTPST 234
+ D TG + FI +K E + +A + T
Sbjct: 141 LPKDKMTGERAAYCFIKYKKVEEGNAAIAALTEQFT 176
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/71 (33%), Positives = 36/71 (50%)
Frame = -1
Query: 440 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 261
D+ KL+V L+ +TT E+ + F YG IE I + D + RG+AF+ F E
Sbjct: 205 DNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKEMALAA 263
Query: 260 MALVNTPSTTR 228
+ +N T R
Sbjct: 264 IKALNGLFTIR 274
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 38.7 bits (86), Expect = 0.003
Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Frame = -1
Query: 464 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 284 APESIDKVMALVNT---PS-----------TTRK*TQRRLKHDMGRFLSEDSAVKSQMMK 147
+ + ++V+ N PS + +R D F+ + +A + +
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 146 SETSFSEFGTILEVEMPFDKTKNQRKGFCFITF--ESEQV 33
ET + + ++ ++ D+ + KG+ F+ F ESEQ+
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = -1
Query: 491 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 318
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
Query: 317 RSRGFAFIVFKAPESIDKVMALVN 246
F+ F ++ + ++N
Sbjct: 300 ------FVQFSEKSCAEEALRMLN 317
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 189 IFVGGLSSEISDDEIRNFF 133
+FVGGL + ++DD ++N F
Sbjct: 263 VFVGGLDASVTDDHLKNVF 281
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 38.7 bits (86), Expect = 0.003
Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 16/160 (10%)
Frame = -1
Query: 464 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 284 APESIDKVMALVNT---PS-----------TTRK*TQRRLKHDMGRFLSEDSAVKSQMMK 147
+ + ++V+ N PS + +R D F+ + +A + +
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 146 SETSFSEFGTILEVEMPFDKTKNQRKGFCFITF--ESEQV 33
ET + + ++ ++ D+ + KG+ F+ F ESEQ+
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -1
Query: 491 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 318
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 189 IFVGGLSSEISDDEIRNFF 133
+FVGGL + ++DD ++N F
Sbjct: 263 VFVGGLDASVTDDHLKNVF 281
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -1
Query: 479 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 303
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 70 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 128
Query: 302 AFIVF 288
A +V+
Sbjct: 129 AEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -1
Query: 479 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 303
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 6 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 64
Query: 302 AFIVF 288
A +V+
Sbjct: 65 AEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -1
Query: 479 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 303
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 72 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 130
Query: 302 AFIVF 288
A +V+
Sbjct: 131 AEVVY 135
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -1
Query: 488 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 309
G +D +E P ++D +LF G L E D L F + V D TG+++
Sbjct: 121 GQSWEDPTLSEWP--ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTK 178
Query: 308 GFAFIVFKAPESIDKVMALVN 246
G+ F+ F P + + +N
Sbjct: 179 GYGFVSFLNPADLAAALKEMN 199
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + + +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 248 NTPSTTRK*TQRRLKHDMGR 189
N + K + +LK D G+
Sbjct: 401 NGCQLSGKKLKVQLKRDNGQ 420
Score = 33.9 bits (74), Expect = 0.090
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -1
Query: 461 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 284 APESIDKVM 258
E DKV+
Sbjct: 62 TREDADKVI 70
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
+ KLFVG L ++ E++ F YG I+ + + + S+G F+ +++ E M
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 166
Query: 257 ALVN 246
+N
Sbjct: 167 EALN 170
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 140 TSFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 12
T F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 30 TLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 506 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 354
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 506 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 354
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = -1
Query: 443 DDDRKLFVGGLSWETTDKELRDHF----GAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 276
D R +F+G L ++ D+E+ F IE++ V DP+ +G A+++FK E
Sbjct: 280 DPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
Query: 275 SIDKVM 258
+ + V+
Sbjct: 340 AANLVL 345
Score = 35.1 bits (77), Expect = 0.039
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = -1
Query: 449 GRDDDRKL----FVGGLSWETTDKELRDHFGAYGEIESINVKTDP--NTGRSRGFAFIVF 288
G DD+ KL FVG L + K + F +GE+ES+ +++ P ++ R+R A ++
Sbjct: 162 GFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLK 221
Query: 287 KAPESIDKVMALV 249
+ E V A V
Sbjct: 222 QINEKASSVHAYV 234
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
+R ++VG L + E+ D F YG I I++K P R G+AF+ F+ P D
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDAD 59
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -1
Query: 479 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 354
S ++++ AP R D ++ V GL + ++L+DH G++
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDV 135
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMA 255
+++VG L T++EL D F A+G + S+ V P G+AF+ F+ P ++ D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDPRDARDAIRA 57
Query: 254 L 252
L
Sbjct: 58 L 58
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -1
Query: 362 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVNT 243
G ++++ V TDP T +G AF+ F ES+ K +AL T
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVALSGT 508
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -1
Query: 458 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 279
E P + LFV LS +T ++ D F GE+ SI + + + G+ G+ F+ F +
Sbjct: 236 ERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASA 294
Query: 278 ESIDKVM 258
+ K +
Sbjct: 295 DETKKAL 301
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -1
Query: 410 SWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
S T++ LRD F GEI + +K + G+SR FA+I F+ + + VN
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQEAQDAITYVN 64
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = -1
Query: 512 AYGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 354
++ GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 93 SFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = -1
Query: 512 AYGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 354
++ GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 93 SFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = -1
Query: 512 AYGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 354
++ GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 93 SFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.022
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = -1
Query: 515 PAYGNAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESI 345
P NA NG S + P ++ D+ L++G L D L + F ++GEI
Sbjct: 450 PWANNAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMA 509
Query: 344 NVKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
V D TG S+G+ F+ + + + + +N
Sbjct: 510 KVIKDRVTGLSKGYGFVKYADVQMANTAVQAMN 542
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.022
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = -1
Query: 515 PAYGNAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESI 345
P NA NG S + P ++ D+ L++G L D L + F ++GEI
Sbjct: 450 PWANNAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMA 509
Query: 344 NVKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
V D TG S+G+ F+ + + + + +N
Sbjct: 510 KVIKDRVTGLSKGYGFVKYADVQMANTAVQAMN 542
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.9 bits (79), Expect = 0.022
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 458 EAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKA 282
E P LFV L++E K L++ F A G + S V N RS G+ F+ FK
Sbjct: 181 ETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKT 240
Query: 281 PESIDKVM 258
+ + +
Sbjct: 241 KKQAEAAL 248
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.5 bits (78), Expect = 0.030
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -1
Query: 416 GLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
GLS TTD+ LR F + + +K D T R +GF FI F++ + K + +N
Sbjct: 77 GLSAYTTDQSLRQLFAPFARL----IK-DQQTQRPKGFGFITFESEDDAQKALKALN 128
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
L V + + +ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 134 FSEFGTILEVEMPFDKTKNQRKGFCFITF 48
F FG + +V +P D Q +GF F+ F
Sbjct: 67 FERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.1 bits (77), Expect = 0.039
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
L+VGGL+ E + L F +G+I+ + D + R F F+ F E M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 137 SFSEFGTILEVEMPFDKTKNQRKGFCFITF 48
+F FG I +V+ P D+ + + F F+TF
Sbjct: 32 AFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 34.3 bits (75), Expect = 0.068
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK 154
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 34.3 bits (75), Expect = 0.068
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 264
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK 154
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.9 bits (74), Expect = 0.090
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIES-INVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
K+FVG L E + F +G IE+ I +K ++ GF FI++ A +S K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV 224
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 222 DPKKAKARHGKIFVGGLSSEISDDEIRNFFQ 130
+P++ + GKIFVG L + I E FF+
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFR 186
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 255
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
Query: 254 L 252
L
Sbjct: 58 L 58
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 255
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
Query: 254 L 252
L
Sbjct: 58 L 58
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = -1
Query: 482 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 303
+ +H S+ P + L++ L + +++ L F +G++ +V G SRGF
Sbjct: 3 NDDNHGSSSCPRKFTS--LYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGF 59
Query: 302 AFIVFKAPESIDKVM 258
AFI F++ +S + M
Sbjct: 60 AFIEFESADSAGRAM 74
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 32.7 bits (71), Expect = 0.21
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -1
Query: 446 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 279
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDP 54
Query: 278 ESID 267
D
Sbjct: 55 RDAD 58
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 497 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 321
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 320 GRSRGFAFIVFKAPESIDKVMALVNT 243
R FAFI ++A E + + N+
Sbjct: 130 ---RNFAFIQYEAQEDATRALDATNS 152
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 497 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 321
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 320 GRSRGFAFIVFKAPESIDKVMALVNT 243
R FAFI ++A E + + N+
Sbjct: 130 ---RNFAFIQYEAQEDATRALDATNS 152
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/61 (26%), Positives = 35/61 (57%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 255
R + VG LS T+ ++++ F GE+ESI+++++ ++ A++ FK + + +
Sbjct: 6 RSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS------AYVTFKETQGAETAVL 59
Query: 254 L 252
L
Sbjct: 60 L 60
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 32.3 bits (70), Expect = 0.28
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -1
Query: 506 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTD 330
G + GG S+ +S+ P + LFV + T ++L HF YG+I ++ ++
Sbjct: 36 GGDKRSGGGSRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVNVRIR-- 89
Query: 329 PNTGRSRGFAFIVFKAPESIDKVMALVN 246
R FAFI ++A E + + N
Sbjct: 90 ------RNFAFIQYEAQEDATRALDASN 111
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 32.3 bits (70), Expect = 0.28
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -1
Query: 506 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTD 330
G + GG S+ +S+ P + LFV + T ++L HF YG+I ++ ++
Sbjct: 77 GGDKRSGGGSRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVNVRIR-- 130
Query: 329 PNTGRSRGFAFIVFKAPESIDKVMALVN 246
R FAFI ++A E + + N
Sbjct: 131 ------RNFAFIQYEAQEDATRALDASN 152
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
+++G + +D+ L D G + +++ D T + +GFAF ++ E D + L
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKL 67
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.3 bits (70), Expect = 0.28
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 431 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
+++VG L T++EL D F ++G I S+ V P G+AF+ F+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP-----PGYAFLDFE 46
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.9 bits (69), Expect = 0.36
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -1
Query: 446 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 279
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDP 54
Query: 278 ESID 267
D
Sbjct: 55 RDAD 58
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 31.9 bits (69), Expect = 0.36
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = -1
Query: 503 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 327
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 326 NTGRSRGFAFIVFKAPESIDKVM-ALVNTPSTTRK 225
T + RGF I + S M +L N P RK
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRK 233
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 31.9 bits (69), Expect = 0.36
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = -1
Query: 503 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 327
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 326 NTGRSRGFAFIVFKAPESIDKVM-ALVNTPSTTRK 225
T + RGF I + S M +L N P RK
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRK 233
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 31.5 bits (68), Expect = 0.48
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = -1
Query: 446 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 267
RD+ R LFV GL + +E+ + F + E+ ++++ ++ FAF VF +S
Sbjct: 31 RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG---AKPFAFAVFSDLQSAV 87
Query: 266 KVMALVN 246
VM +N
Sbjct: 88 AVMHALN 94
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 386 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVNT 243
L HF + GEI + V TD G + AF+ + + DK + L T
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKALQLSGT 180
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
R ++VG L + + E+ D F YG I I +K P R + F+ F+
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFE 53
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -1
Query: 395 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 258
++++RDHF YGEIESI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = -1
Query: 434 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 276
R L+VG L ++EL D F +GE+ES+ + GRS +AF+ F E
Sbjct: 23 RHLWVGNLPHGILERELADRFLRFGELESLAFQ----PGRS--YAFVNFNHDE 69
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -1
Query: 464 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 174 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 228
Query: 287 KAPESIDKVM-ALVNT 243
+ M AL NT
Sbjct: 229 YDIRAAHAAMRALQNT 244
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -1
Query: 464 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 288
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 187 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 241
Query: 287 KAPESIDKVM-ALVNT 243
+ M AL NT
Sbjct: 242 YDIRAAHAAMRALQNT 257
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = -1
Query: 395 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
++++ D+F +G ++ + + + R F F+ F PE++ ++A N
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGN 214
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -1
Query: 425 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAL 252
F L + L +F ++GEI + V TG S G+A+I K E +K + L
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALEL 296
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -1
Query: 470 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 309
+N A G D + LFV L++E+++ +++ F +YG I+ + G R
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -1
Query: 506 GNAENGG--GDSQDHNSAEAPGRDDDR 432
GN E G GD D++ + PG DDD+
Sbjct: 963 GNHERGSESGDGDDYDDGDGPGSDDDK 989
>At5g05230.1 68418.m00558 expressed protein
Length = 363
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 542 FCTRYYHRQPAYGNA-ENGGGDSQDHNSAEAPGRDDD 435
F +Y +P GN ++GG D +D E DDD
Sbjct: 66 FRQNFYSEKPIIGNPNDSGGSDGEDDVDVEEEDEDDD 102
>At5g04770.1 68418.m00492 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 583
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +1
Query: 76 WFFVLS---KGISTSKIVPNSLKEVSDFII*DFTAESSDKNLPMSCFSLLWVYFLVVDGV 246
W FV+S KG + V + V II T ESS N+ M+ F + +++F++V G
Sbjct: 176 WRFVVSGLPKGFNEIDPVAVLVVLVITVIICCSTRESSKVNMIMTAFHIAFIFFVIVMG- 234
Query: 247 FTRAMTLSIDSGA 285
F + + ++ S A
Sbjct: 235 FIKGDSKNLSSPA 247
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -1
Query: 437 DRKLFVGGLSWETTDKELR----DHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 285
D LFV G E++ +HF + G++ I V +TG S G+AFI K
Sbjct: 116 DSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK 170
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 461 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 336
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 461 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 336
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 506 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 378
G AE+GGG S SA A +DD G + E+RD
Sbjct: 79 GGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At2g04280.1 68415.m00420 expressed protein
Length = 568
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = -1
Query: 182 SEDSAVKSQ---MMKSETSFSEFGTILEVEMPFDKTKNQRKG 66
S+DS VK+ M+ ++T+F+EF I +VE ++T + +G
Sbjct: 74 SDDSVVKTGEDFMLANQTAFAEFININDVEASTNETTTEEEG 115
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 386 LRDHFGAYGEIESINVKTDPNTGRSRGF 303
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 386 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVNTPSTTRK 225
L +HF + G I ++ + P T G A I ++ +KVM L + RK
Sbjct: 5 LTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRK 58
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1
Query: 428 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
L V L+ ++++L + FG YGEI+ I + PN R F+ F S D + +
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEI--RETPN---KRHHKFVEFFDVRSADAALKAL 278
Query: 248 N 246
N
Sbjct: 279 N 279
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = -1
Query: 398 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
TD+++ ++FG +G ++ + + + R F F+ F E++ ++A N
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGN 377
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/50 (20%), Positives = 27/50 (54%)
Frame = -1
Query: 395 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALVN 246
++++ ++F +G ++ + + + R F F+ F PE++ ++A N
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGN 317
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 362 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMALV 249
G ++S DP T + +GF F F++ E I + + L+
Sbjct: 227 GHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLL 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,860,647
Number of Sequences: 28952
Number of extensions: 289326
Number of successful extensions: 1374
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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