Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00081
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339...    31   1.3  
06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105...    30   1.7  
03_04_0101 - 17283293-17284009                                         30   1.7  
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38...    29   3.9  
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    29   5.2  
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    29   5.2  
08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224...    28   9.1  

>12_02_1015 +
           25331667-25332169,25333305-25333406,25333775-25333919,
           25334002-25334186,25334297-25334401,25334507-25334604,
           25334686-25334924,25335030-25335123,25335190-25335275,
           25335579-25335677,25335804-25335869
          Length = 573

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 85  LVEEKEPQKEKGYVGALYGGIKRC 156
           L    +P+ E+ Y G +YGGIK C
Sbjct: 401 LCANSQPEAERSYFGEIYGGIKFC 424


>06_01_0138 -
           1051408-1051625,1052790-1052889,1053724-1054085,
           1055055-1055079
          Length = 234

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 578 NQLPCICPQLLAVPSSYAFSVFSVLPLL 495
           N L  +CP   AVPS+ +FS F ++P +
Sbjct: 167 NLLYILCPAFSAVPSAASFSAFRIVPAM 194


>03_04_0101 - 17283293-17284009
          Length = 238

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = -2

Query: 707 MIDIPLHLSRNIGYRSGA*ANRSECLSLLVNTLHIGISHLALLNQLPCICPQ---LLAVP 537
           + ++P  L+  + Y   A A   E   LL     I  + L L +    I P+    LA  
Sbjct: 9   LAELPAPLAMVLSYADAARATLDEAAGLLRE--EIQATELLLAHAFSAIAPRDGPALAAA 66

Query: 536 SSYAFSVFSVLPLLPG 489
           +  A  VFS  PLLPG
Sbjct: 67  AKLAARVFSDAPLLPG 82


>10_01_0030 -
           386008-388056,388166-388360,388931-389062,389167-389538,
           389753-389894,392274-392533,392737-393015,394796-394939
          Length = 1190

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 13  LHNYLRKHRFCADCKTKVLRAYQLLVEEKEPQKE 114
           +H +  K RFC DC+  V+R ++ L E K  ++E
Sbjct: 226 MHRFDSK-RFCRDCRRNVIREFKELKELKRLRRE 258


>03_02_0232 +
           6614784-6614882,6616145-6616477,6616708-6616967,
           6617328-6617469,6617567-6617938,6618056-6618187,
           6618907-6619035,6619125-6621188
          Length = 1176

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 37  RFCADCKTKVLRAYQLLVEEKEPQKE 114
           RFC DC+  V+R ++ L E K  ++E
Sbjct: 236 RFCRDCRRNVIREFKELKELKRMRRE 261


>02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,
            1216413-1216738,1216860-1217013,1217377-1217438,
            1218078-1218133,1219456-1221279,1221775-1222698,
            1222855-1222866
          Length = 1242

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -2

Query: 347  KTKGDALQTFIYTYSKTYQNLFL 279
            K K +AL+T++++YS  YQ+L L
Sbjct: 1046 KIKEEALRTYLFSYSSCYQSLSL 1068


>08_02_0134 -
           13021294-13021350,13021478-13021658,13022383-13022433,
           13025134-13025187,13026154-13026248,13026565-13026888
          Length = 253

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 269 GNCTRRGSDMSWNMYI*TSATHLPSSSGRRRHLPNACC-SCSRGTI 403
           G C R GS   W  +I  + T L  SS   +   + CC  C +G +
Sbjct: 120 GECLR-GSGSGWGRFIGCTQTRLVGSSSAGKTRTSVCCRRCFQGIL 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,526,268
Number of Sequences: 37544
Number of extensions: 340938
Number of successful extensions: 898
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)