Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00081
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)            108   5e-24
SB_56308| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)          29   5.3  

>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
          Length = 628

 Score =  108 bits (259), Expect = 5e-24
 Identities = 46/85 (54%), Positives = 62/85 (72%)
 Frame = +1

Query: 1   LHDTLHNYLRKHRFCADCKTKVLRAYQLLVEEKEPQKEKGYVGALYGGIKRCLLDKHLHL 180
           L DTL +YLRKHRFC++CK+KVLRA+ +L  + +   EKG+  ALY G+K C  ++H+H+
Sbjct: 182 LLDTLEHYLRKHRFCSECKSKVLRAFSILAGDLDGPSEKGFCPALYDGLKSCAQERHIHV 241

Query: 181 QAKTDYIAHLIARAEPELLGNHRES 255
              TD+IAHLI RAEPEL G  R +
Sbjct: 242 LCDTDFIAHLIGRAEPELAGGERHA 266



 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 41/81 (50%), Positives = 58/81 (71%)
 Frame = +3

Query: 255 HAKTLEIAQEEVLICLGICIYERLQRISLRLREEEGTCQTLAAVAVEALYRKFETAVEHK 434
           HAKTL+IAQEEVL CLGI +++RL R+  +LR EE T Q L  + V AL + FE AVE K
Sbjct: 265 HAKTLDIAQEEVLTCLGIHLWDRLHRLWQKLRAEEQTWQMLFYLGVNALRKGFEVAVEEK 324

Query: 435 SGVSKLQLLYDEITQEELTRQ 497
            G+S+L+ + +EI++ E  ++
Sbjct: 325 LGISRLEQVVEEISEAERAKE 345


>SB_56308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 7   DTLHNYLRKHRFCADCKTKVLRAY-QLLVEEKEPQKEKGYVGALYGGIKRCLLD 165
           DT  N  + H    DC  KV +AY   L   K  Q+    +G L     RCLLD
Sbjct: 285 DTWCNIAQVHEESKDCYEKVEQAYLNALESAKRAQRPHAQIGVL-----RCLLD 333


>SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)
          Length = 611

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +1

Query: 97  KEPQKEKGYVGALYGGIKRCLLDKHLHLQAKTDYIAHLIARAEPELLGNHRE 252
           K+P   K  V   Y    + LLDKH  L+AK   I    A   PE+    R+
Sbjct: 333 KKPNDRKCLVARQYDNTLKALLDKHAPLKAKLVTIRPKAAWYTPEVSEEKRK 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,749,852
Number of Sequences: 59808
Number of extensions: 406543
Number of successful extensions: 965
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)