Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00081
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.3  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 468 HHTAAVVWRP 439
           HHT  VVW+P
Sbjct: 128 HHTGKVVWKP 137


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
 Frame = +1

Query: 76  YQLL-VEEKEPQKEKGYVGALYGGIKR-------CLLDKHLHLQAKTDYIAHLIAR 219
           YQ++ VE+ +  KE+G +  + GGI++        L++    +QA  +Y A+L  +
Sbjct: 669 YQVVSVEQYQQLKEQGQISQVGGGIQQNVEVLPENLVNAQQQVQAVRNYYANLYTK 724


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 67  LRAYQLLVEEKEPQKEKGYVGALYGGIKRCLL 162
           +  + + + E  P  EK  + +LY G+  CL+
Sbjct: 255 MTVFLMTIRESLPPTEKTPLISLYYGVSICLV 286


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 359 RHLPNACCSCSRGTIPQ 409
           RH+P+A  + S  T+P+
Sbjct: 425 RHIPHASVTDSENTVPR 441


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = +2

Query: 377 CCSCSRGTIP-QVRNCC 424
           C SC +GT+P +  + C
Sbjct: 626 CISCRQGTVPDETHSAC 642


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,521
Number of Sequences: 438
Number of extensions: 3755
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)