Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00081
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58050.1 68416.m06471 expressed protein                             29   2.5  
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ...    28   5.7  
At2g41960.1 68415.m05191 expressed protein                             27   10.0 
At2g40113.1 68415.m04932 hypothetical protein                          27   10.0 
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ...    27   10.0 

>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 1   LHDTLHNYLRKHRFCADCKTKVLRAYQLLVEEKEPQKE 114
           + D L  +  K RFC DC+  V+R ++ L E K  ++E
Sbjct: 264 IQDVLTKFDSK-RFCRDCRRNVIREFKELKELKRMRRE 300


>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           chloroplast RNA-binding protein (cp33) GB:BAA06523
           (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
           (1995)); contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 13  LHNYLRKHRFCADCKTKVLRA---YQLLVEEKEPQKEKGYVG 129
           LH+ +R+HRF    +T+   A    Q  VEE+E  +E+G  G
Sbjct: 57  LHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEG 98


>At2g41960.1 68415.m05191 expressed protein 
          Length = 1215

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 37  RFCADCKTKVLRAYQLLVEEKEPQKE 114
           +FC DC+  V+R ++ L E K  Q++
Sbjct: 245 KFCRDCRRNVIREFKELKELKRIQRD 270


>At2g40113.1 68415.m04932 hypothetical protein
          Length = 144

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 436 LLCSTAVSNLRYSASTATAA 377
           LLC+T VS + Y+AS AT A
Sbjct: 21  LLCNTPVSGILYTASCATVA 40


>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 384

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 272 NCTRRGSDMSWNMYI*TSATHLPSSSGRRRHLPNACCSCSRGTIPQVRNC 421
           N   RGS  S +    ++A++   + G+       CC    GT P + NC
Sbjct: 62  NKKTRGSPSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNC 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,234,155
Number of Sequences: 28952
Number of extensions: 277075
Number of successful extensions: 676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)