Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00080
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    38   6e-05
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.0  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   6.9  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    21   6.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 38.3 bits (85), Expect = 6e-05
 Identities = 17/44 (38%), Positives = 30/44 (68%)
 Frame = +3

Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
           FE   L+  LL  + + G+ KP+ IQ+ +IP+ LSG+D+++ A+
Sbjct: 160 FETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQ 203



 Score = 28.3 bits (60), Expect = 0.060
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 9/46 (19%)
 Frame = +2

Query: 509 GTGKTGAYCIPVLEQV-------DPKKDTIQALIVV--PTRELALQ 619
           G+GKT A+ +P++  +       + + +  Q ++V+  PTRELA+Q
Sbjct: 205 GSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQ 250


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 315 IPPKDRRIKTSDVTDTRGNEFEEFCLKR 398
           I  K  R ++    D+ GN  EEF L R
Sbjct: 185 ISDKAARPRSLQFVDSEGNILEEFVLSR 212


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 171 LKLETYNHTNYYLSK 127
           L+LE   HTN+YL++
Sbjct: 236 LELEKEFHTNHYLTR 250


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 171 LKLETYNHTNYYLSK 127
           L+LE   HTN+YL++
Sbjct: 18  LELEKEFHTNHYLTR 32


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +3

Query: 609 WHSKHHRFVLNW 644
           WH+    FV NW
Sbjct: 338 WHTGERPFVCNW 349


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,478
Number of Sequences: 336
Number of extensions: 2463
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)