Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00080
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 105 4e-24
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 50 3e-07
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 50 4e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 48 9e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 48 1e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 48 2e-06
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 46 4e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 43 3e-05
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 43 5e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 43 5e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 42 1e-04
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 42 1e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 40 3e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 39 6e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 39 7e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 39 7e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 38 0.001
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 36 0.004
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 36 0.005
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.016
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 33 0.037
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 33 0.037
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 30 0.26
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.4
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 7.4
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 9.8
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 25 9.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.8
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 9.8
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 105 bits (253), Expect = 4e-24
Identities = 52/84 (61%), Positives = 61/84 (72%)
Frame = +3
Query: 285 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 464
D +K ++K P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQE SI
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESI 75
Query: 465 PIALSGKDVLARAKKELVKLVLIV 536
PIALSG+D+LARAK K V
Sbjct: 76 PIALSGRDILARAKNGTGKTAAFV 99
Score = 74.5 bits (175), Expect = 1e-14
Identities = 34/52 (65%), Positives = 41/52 (78%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
GTGKT A+ IP LE+VD KK IQ LI+VPTRELALQTSQ+C L KH +++
Sbjct: 91 GTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVK 142
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 50.0 bits (114), Expect = 3e-07
Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQV--DPKK-DTIQALIVVPTRELALQTSQICIELAKHTDI 661
G+GKT A+ +P+LE++ PKK T + LI+ PTRELA+Q + ++A TDI
Sbjct: 306 GSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDI 359
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +3
Query: 339 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
K + T + F+ L R +L G+ G+E P+ IQ+ +IP+AL GKD++ A
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAA 303
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 449 SRGLNSYCPKWKRCTCKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQ 628
SR + C K + ++ GTGKT + I +L+ +D QALI+ PTRELA+Q
Sbjct: 49 SRAIIQIC-KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQN 107
Query: 629 ICIELAKHTDIR 664
+ + L H +++
Sbjct: 108 VVLALGDHMNVQ 119
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 369 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
+ FEE LK +LL GI+ G+E PS +Q +I G+DV+A+A+
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQ 66
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 48.4 bits (110), Expect = 9e-07
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLVLIV 536
F +F LK ELL I + G+E PS +Q+ IP ++ G DVL +AK + K + V
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFV 106
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 494 CKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKH-TDIR 664
C++ G GKT + + L+Q++P + L++ TRELA Q +K+ D+R
Sbjct: 93 CQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVR 150
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +2
Query: 497 KS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
+S GTGKT A+ + +L +VD QA+ + P+RELA Q + E+ K+T+++
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALS 479
FEE LK ELL GI+ ++KPS IQE ++P+ LS
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLS 150
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/76 (35%), Positives = 41/76 (53%)
Frame = +3
Query: 279 SIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEA 458
S +D G K+ +RR K N F+ L + LL IF+KG++ P+PIQ
Sbjct: 40 SDEDDGNYIASKLLESNRRTKGKKGNGKASN-FQSMGLNQTLLRAIFKKGFKAPTPIQRK 98
Query: 459 SIPIALSGKDVLARAK 506
+IP+ L G+DV+ A+
Sbjct: 99 TIPLLLEGRDVVGMAR 114
Score = 46.4 bits (105), Expect = 4e-06
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPK--KDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT A+ IP++E + +ALI+ P RELALQT ++ + +K TD+R
Sbjct: 116 GSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLR 169
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 46.4 bits (105), Expect = 4e-06
Identities = 21/45 (46%), Positives = 29/45 (64%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIEL 643
GTGKT + I VL+++D QALI+ PTRELA Q ++ + L
Sbjct: 66 GTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVAL 110
Score = 43.2 bits (97), Expect = 3e-05
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F++ LK ELL GI+ G+E+PS IQ+ +I L +DVLA+A+
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +2
Query: 434 EAISYSRGLNSYCPKWKRCTCKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 613
E G+ + + + C + G+GKT A+ +P++E+ I ALI+ PTRELA
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELA 88
Query: 614 LQTSQICIELAKHTDIR 664
+Q + L + +++
Sbjct: 89 IQIDEQFAALGANLNLK 105
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 42.7 bits (96), Expect = 5e-05
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Frame = +2
Query: 509 GTGKTGAYCIPVLE------QVDPKKDTIQALIVVPTRELALQTSQICIEL 643
G+GKT AY IP+LE Q+D + I AL++VPTRELA Q + +L
Sbjct: 61 GSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F +F L L I + +EKP+ +Q +IP+AL GKD++A+A+
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQAR 59
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 4/51 (7%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKK----DTIQALIVVPTRELALQTSQICIELAK 649
G+GKT A+ +P++E + KK D + AL++ PTRELA+QT + +++ +
Sbjct: 86 GSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR 136
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 369 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
NEF L LL I G+ +P+P+Q+ SIPI SG+D++A A+
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQ 214
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKK-----DTIQALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT +YC+P + ++ + D L++ PTRELA+Q Q C + K + IR
Sbjct: 169 GSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIR 225
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVL 494
FEE +L + + G+E P+PIQ+ + P+A+SG+D++
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMV 163
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 497 KS*EGTGKTGAYCIPVLEQVDPKKDT--IQALIVVPTRELALQTSQ 628
K+ G+GKT A+ IP+LE D +QAL+V PTRELA Q Q
Sbjct: 165 KADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQ 210
Score = 33.9 bits (74), Expect = 0.021
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 384 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
F L E+L + + G+ KP PIQ IP A G D++ +A
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKA 166
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 39.1 bits (87), Expect = 6e-04
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQ 628
G+GKT A+ +PV++++ A+++ PTRELA Q S+
Sbjct: 93 GSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISE 132
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Frame = +3
Query: 357 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK----KE 512
D++ NE F+E + EL + G++ P+PIQ+ +IP+ L+ +DV+ A+ K
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 513 LVKLVLIVFQFWN 551
+ ++ + WN
Sbjct: 98 AAFALPVIQELWN 110
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 38.7 bits (86), Expect = 7e-04
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQV---DPKKDTIQALIVVPTRELALQTSQICIEL 643
G+GKT AY +P ++V D + + ALIV PTRELA Q + EL
Sbjct: 48 GSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKEL 95
Score = 29.5 bits (63), Expect = 0.46
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
F+ + + L + +G++K +P+Q +IP+ L KD++ A
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEA 45
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 38.7 bits (86), Expect = 7e-04
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Frame = +3
Query: 285 DDVGWKSKL--KIPPKDRRIKTSDVT-DTRGNE-------FEEFCLKRELLMGIFEKGWE 434
DDV W+ K + P+D RI D +G++ +EE L E+L + + ++
Sbjct: 211 DDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYK 270
Query: 435 KPSPIQEASIPIALSGKDVLARAK 506
+PS IQ A+IP+ L KD++ A+
Sbjct: 271 EPSSIQRAAIPVLLQRKDLIGIAE 294
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 8/45 (17%)
Frame = +2
Query: 509 GTGKTGAYCIPV---LEQVDPKKDTIQ-----ALIVVPTRELALQ 619
G+GKT A+ IP+ + ++ P ++ A+++ PTRELA Q
Sbjct: 296 GSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQ 340
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVD---PKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT A+ IP L+ ++ K + L+V PTRELA+QT + L + T+++
Sbjct: 212 GSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLK 266
Score = 33.5 bits (73), Expect = 0.028
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +3
Query: 372 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
+F+E + +L G+ K +++P+PIQ A+ P L+G+DV+ A+
Sbjct: 168 QFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAE 210
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQV-----DPKKDTIQALIVVPTRELALQTSQICIELAKH 652
G+GKT A+ IP +E + P+ T +I+ PTRELALQ + EL K+
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKPRNGT-GVIIISPTRELALQIFGVAKELLKY 187
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +3
Query: 324 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
K + S +D +F + L + I E G+E + IQ+ SIP L+G+DVL A
Sbjct: 76 KSVNLNASSTSDIE--KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAA 133
Query: 504 K 506
K
Sbjct: 134 K 134
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.9 bits (79), Expect = 0.005
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +2
Query: 452 RGLNSYCPKWKRCTCKS*EGTGKTGAYCIPVLEQV---DPKKDT--IQALIVVPTRELAL 616
R LN P + ++ GTGKT A+ + + V P+ ++ I ++I+ PTRELAL
Sbjct: 67 RVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELAL 126
Query: 617 QTSQICIELAKHTDIR 664
Q + +L T IR
Sbjct: 127 QIFEEARKLTYGTGIR 142
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.016
Identities = 14/41 (34%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKK-DTIQALIVVPTRELALQTSQ 628
G+GKT +Y IP+++ + + ++ +++VPTREL +Q ++
Sbjct: 183 GSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAK 223
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 33.1 bits (72), Expect = 0.037
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 390 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
L + + I G+EKP+ IQ +IP SG+DV+ AK
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAK 463
Score = 32.7 bits (71), Expect = 0.049
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQ-----ALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT A+ +P+ + ++ A+I+ PTRELA+Q + C K +IR
Sbjct: 465 GSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIR 521
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 33.1 bits (72), Expect = 0.037
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVD-PKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT AY P+L+++ +A+IV PTREL Q + +L+ T ++
Sbjct: 93 GSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLK 145
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 30.3 bits (65), Expect = 0.26
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVD--PKK-----DTIQALIVVPTRELALQTSQICIEL 643
G+GKT AY +P+++++ PK I A+I+ PTREL Q + +L
Sbjct: 188 GSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKL 239
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 550 FQNWNTISTSFTSSFLALASTSFPLRAIGIEAS 452
FQ+ T ++S T+S A ASTS P AI + A+
Sbjct: 127 FQSMTTFTSSQTNSGHASASTSIPSTAITVTAN 159
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 434 EAISYSRGLNSYCPKWKRCTCKS*EGTGKTGAYCI 538
+ I YS +CP+ RC CK E + + CI
Sbjct: 324 DEIGYSHAPLLHCPRKGRCFCKPEEIDLSSNSSCI 358
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -3
Query: 520 FTSSFLALASTSFPLRAIGIEAS*IGDGFSHPFSKIPINNSRFKQNSSNSLPLV 359
+ S F ++ S L+ +G++ D + PF PI ++ + SS + +V
Sbjct: 946 YPSGFALISIVSADLQDVGVDLRVFTDNAAFPFITTPIAKTKTPRWSSFGISMV 999
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 1 VEYRVSSPFLNFYLA 45
VEY++ S FL FYLA
Sbjct: 237 VEYKMESGFLRFYLA 251
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 252 QQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDT 362
+ + E+DK+ D G +KLK PK ++T D+ T
Sbjct: 1324 ENLRRELDKAFDRSGTAAKLK-HPKKTVVETLDILTT 1359
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 9.8
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -3
Query: 511 SFLALASTSFPLRAIGIEAS*IGDGFSHPFSKIPINNSRFKQNSSNSLPLVS 356
++ L+ S L + G+E S I S P S NN RFK S S+ S
Sbjct: 224 TYTPLSEISNGLNSNGVENSSITK--SSPRSSSSSNNERFKDTSEESIIFTS 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,845
Number of Sequences: 5004
Number of extensions: 44044
Number of successful extensions: 160
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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