Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00080
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 126 2e-29
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 126 2e-29
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 50 2e-06
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 48 5e-06
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 47 2e-05
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 46 2e-05
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 44 1e-04
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 43 2e-04
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 43 3e-04
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 38 0.007
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.068
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 35 0.068
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 34 0.12
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 33 0.16
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 32 0.48
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 31 0.64
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 30 1.9
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 29 2.6
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 29 2.6
SB_59149| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06) 28 7.9
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 126 bits (303), Expect = 2e-29
Identities = 54/70 (77%), Positives = 65/70 (92%)
Frame = +3
Query: 297 WKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAL 476
WK+ LK+PPKD R KTSDVT T+GNEFE++CLKRELLMGIFEKG++KPSPIQE SIP+AL
Sbjct: 23 WKANLKLPPKDNRFKTSDVTATKGNEFEDYCLKRELLMGIFEKGFDKPSPIQEESIPVAL 82
Query: 477 SGKDVLARAK 506
+G+D+LARAK
Sbjct: 83 AGRDILARAK 92
Score = 78.2 bits (184), Expect = 6e-15
Identities = 35/48 (72%), Positives = 41/48 (85%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKH 652
GTGKT AY +P+LE+ D K+ IQAL++VPTRELALQTSQICIEL KH
Sbjct: 94 GTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKH 141
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 126 bits (303), Expect = 2e-29
Identities = 54/70 (77%), Positives = 65/70 (92%)
Frame = +3
Query: 297 WKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAL 476
WK+ LK+PPKD R KTSDVT T+GNEFE++CLKRELLMGIFEKG++KPSPIQE SIP+AL
Sbjct: 23 WKANLKLPPKDNRFKTSDVTATKGNEFEDYCLKRELLMGIFEKGFDKPSPIQEESIPVAL 82
Query: 477 SGKDVLARAK 506
+G+D+LARAK
Sbjct: 83 AGRDILARAK 92
Score = 78.2 bits (184), Expect = 6e-15
Identities = 35/48 (72%), Positives = 41/48 (85%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKH 652
GTGKT AY +P+LE+ D K+ IQAL++VPTRELALQTSQICIEL KH
Sbjct: 94 GTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKH 141
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Frame = +3
Query: 324 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
KD + ++ + +F +F + + L G+ + G+ P+ IQ+ IP+ALSG+DVL A
Sbjct: 35 KDLEDRCKEIGSSEVEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAA 94
Query: 504 K----KELVKLVLIVFQFW 548
K K L L+ I+ W
Sbjct: 95 KTGSGKTLAFLIPIIETLW 113
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKK----DTIQALIVVPTRELALQTSQICIELAKHTDI 661
G+GKT A+ IP++E + +K D + AL++ PTRELA QT ++ +++ D+
Sbjct: 97 GSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQTFEVLVKIGNKHDL 151
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Frame = +2
Query: 509 GTGKTGAYCIPVLE--QVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT A+ IP+ E Q K I+ALI+ PTRELALQT + EL + T ++
Sbjct: 328 GSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFIKELGRFTGLK 381
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +3
Query: 339 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
+T+DV +F L LL G+ E G+EKPSPIQ +IP+ G D++A+AK
Sbjct: 3 RTTDVLIEEQIDFHSLLLSPTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAK 58
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTD 658
GTGKT + + LE V + + IQ +I+ PTRE+A+Q + + H D
Sbjct: 60 GTGKTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYD 109
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKTGA+ +P+L+ + + ALI+ PTRELA Q S+ C L ++
Sbjct: 11 GSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGVK 62
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLVLIV 536
F +F LK ELL I + G+E PS +Q IP A+ G D++ +AK + K + V
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFV 102
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 494 CKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQ 619
C++ G GKT + + L+Q++P + L++ TRELA Q
Sbjct: 89 CQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQ 130
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLVLIV 536
F +F LK ELL I + G+E PS +Q IP A+ G D++ +AK + K + V
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFV 102
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 494 CKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQ 619
C++ G GKT + + L+Q++P + L++ TRELA Q
Sbjct: 89 CQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQ 130
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
GTGKT + I VL+ +D + QAL++ PTRELA Q ++ + L + ++
Sbjct: 44 GTGKTATFSISVLQAIDTQLREPQALVLSPTRELANQIQKVVLALGDYMSVQ 95
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +3
Query: 423 KGWEKPSPIQEASIPIALSGKDVLARAK 506
+G+EKPS IQ+ +I L G+DV+A+A+
Sbjct: 15 EGFEKPSAIQQRAIKPILKGRDVIAQAQ 42
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +2
Query: 497 KS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKH 652
+S GTGKT A+ + +L +VD K Q + + PT ELA QT ++ + KH
Sbjct: 148 QSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKH 199
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 252 QQTKGEV-DKSIDDVGWKSKLKIPPKDRRIKTSDVTDT--RGNEFEEFCLKRELLMGIFE 422
+ TK E+ + S+ + KL + + + SD + FEE L L G+++
Sbjct: 61 KDTKNELAESSLLTKLLRDKLVVTKHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYD 120
Query: 423 KGWEKPSPIQEASIPIALSGKDV 491
G+ KPS IQE ++P+ L+ V
Sbjct: 121 MGFNKPSKIQETALPMLLADPPV 143
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +2
Query: 488 CTCKS*EGTGKTGAYCIPVLEQV---DPKKDTIQALIVVPTRELALQ 619
C C + GTGKT A+ +P+LE++ + I+ L++ PTRELA+Q
Sbjct: 51 CACAA-TGTGKTAAFMLPILERLLYRPTQSPAIRVLVITPTRELAIQ 96
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +3
Query: 420 EKGWEKPSPIQEASIPIALSGKDVLARA 503
E G+ P+PIQ ++IP+AL GKDV A A
Sbjct: 27 ELGFLHPTPIQASTIPVALMGKDVCACA 54
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +3
Query: 369 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
N FEE L L + + ++KP+P+Q+ SIPI ++G+DV+A A+
Sbjct: 711 NSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQ 756
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVD---------PKKDTIQALIVVPTRELALQTSQICIELAK 649
G+GKT A+ +PV+ + + T QA+ + PTRELA +QI +E K
Sbjct: 758 GSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELA---NQIYLEARK 810
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +3
Query: 369 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
N FEE L L + + ++KP+P+Q+ SIPI ++G+DV+A A+
Sbjct: 134 NSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQ 179
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +2
Query: 461 NSYCPKWKRCTCKS*EGTGKTGAYCIPVLEQVDPKK------DTIQALIVVPTRELALQT 622
N Y + ++ GTGKT + I +L+++D D QAL++ PTRELA Q
Sbjct: 116 NHYVLSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQI 175
Query: 623 SQICIELAKHTDIR 664
++ + L + ++
Sbjct: 176 QKVVLALGDYMHVK 189
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASI 464
F++ LK LL GI+ G+EKPS IQ+ +I
Sbjct: 65 FDDMNLKEALLRGIYAYGFEKPSAIQQRAI 94
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 41.1 bits (92), Expect = 8e-04
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F E +L+ I G+ +P+P+Q+A++PI ++G+D++A A+
Sbjct: 481 FNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQ 524
Score = 34.7 bits (76), Expect = 0.068
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQV------DPKKDTIQALIVVPTRELALQTSQICIELAKHTD 658
G+GKT AY +PVL + P + + AL V PTRELA QI IE K +D
Sbjct: 526 GSGKTAAYMLPVLTSLIKQGLNAPPRSPL-ALCVAPTRELA---KQIYIEARKFSD 577
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQ 619
G+GKT A+ +P+L+++ I A+++ PTRELA Q
Sbjct: 54 GSGKTAAFALPILQKLCDDPYGIFAVVLTPTRELAFQ 90
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Frame = +2
Query: 509 GTGKTGAYCIPVLE-----QVDPKKDTIQALIVVPTRELALQTSQICIELAKH 652
G+GKT A+ +PV+E Q + T +I+ PTREL+LQT + +L KH
Sbjct: 619 GSGKTLAFLVPVVELLYKLQFKTRNGT-GVIIISPTRELSLQTYGVARDLLKH 670
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +3
Query: 372 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
+FE+ L LL + G++KP+P+Q+ +IPI +D++A A+
Sbjct: 876 QFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQ 920
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 34.7 bits (76), Expect = 0.068
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +3
Query: 420 EKGWEKPSPIQEASIPIALSGKDVLA 497
+ +EKP+PIQ +IP+ +SG+D++A
Sbjct: 122 KNSYEKPTPIQAQAIPVIMSGRDMIA 147
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 527 AYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
A IPV+ +D I A+++ PTRELA+Q + C + K ++R
Sbjct: 133 AQAIPVIMS---GRDMI-AIVMTPTRELAIQIHRECKKFCKPNNLR 174
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 34.7 bits (76), Expect = 0.068
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = +3
Query: 273 DKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQ 452
D+ +D++ WK+ + I +D F + L EL + +K ++ P+PIQ
Sbjct: 48 DEVVDEIRWKNGIHIEGED--------CPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQ 99
Query: 453 EASIPIALSGKDVLARAK 506
S+ +SG+D++ A+
Sbjct: 100 MQSLSCVMSGRDIIGLAE 117
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKK-----DTIQALIVVPTRELALQ 619
G+GKT AY +P+ + K DT ALI+ PTREL Q
Sbjct: 119 GSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQ 160
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F F +++ I + + +P+ IQ ++PIALSG+D++ AK
Sbjct: 519 FAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAK 562
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 372 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLV 527
EF L + G+ P+PIQ +P+ LSG+DV+ A KL+
Sbjct: 197 EFFHCSFNESLSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Frame = +2
Query: 509 GTGKTGAYCIPVL------EQVDPKKDTIQ---ALIVVPTRELALQTSQICIELAKHTDI 661
G+GKT A+ IP+L +++ D Q ALI+ PTRELA Q + ++ + I
Sbjct: 148 GSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGI 207
Query: 662 R 664
R
Sbjct: 208 R 208
Score = 31.5 bits (68), Expect = 0.64
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Frame = +3
Query: 279 SIDDVGWKSKL--KIPPKDRRIKTSDVT-DTRGN-------EFEEFCLKRELLMGIFEKG 428
+ DD W K ++ +D RI D T+G +++E + +L + + G
Sbjct: 61 AFDDRHWTKKNLEEMTERDWRIFREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLG 120
Query: 429 WEKPSPIQEASIPIALSGKDVLARAK 506
++ P+PIQ +IPI L +D++ A+
Sbjct: 121 YKDPTPIQRQAIPIGLQNRDIIGVAE 146
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 581 ALIVVPTRELALQTSQICIELAKHTDIR 664
ALI+ PTRELALQ ++ AK+T ++
Sbjct: 221 ALIMAPTRELALQVKDHLVKAAKYTSVK 248
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIA-LSGKDVLARAK 506
E+E + ++L + ++G+ KP+PIQ SIP A L +D++ A+
Sbjct: 131 EWEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAE 176
>SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 369 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIA-LSGKDVLARAK 506
+E+E + ++L + ++G+ KP+PIQ SIP A L +D++ A+
Sbjct: 72 SEWEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAE 118
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 31.9 bits (69), Expect = 0.48
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Frame = +2
Query: 494 CKS*EGTGKTGAYCIPVLEQV--DPKKDTI-------QALIVVPTRELALQTSQICIELA 646
C + G+GKT AY P++ ++ D ++ I +A IVVP RELA Q + L
Sbjct: 420 CAAQTGSGKTLAYLAPLVHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLC 479
Query: 647 KHTDIR 664
H R
Sbjct: 480 HHARFR 485
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 372 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
EF F + +L+ + + G KP PIQE ++P S K +L +++
Sbjct: 161 EFSNFGVHPKLVEKLKKMGITKPVPIQEKALPSVFSHKSLLIKSE 205
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 482 KRCTCKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQ 619
K KS GTGK+ + +P ++ DP + +IVVPTRELA Q
Sbjct: 198 KSLLIKSETGTGKSLVFLLPSVQ--DPGRG-YGTIIVVPTRELASQ 240
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 560 PKKDTIQALIVVPTRELALQTSQICIELAK 649
PKK +A++V PTRELA Q + LAK
Sbjct: 201 PKKSGFRAVVVSPTRELAQQIYREFCHLAK 230
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKK------DTIQALIVVPTRELALQ 619
GTGKT ++ +P++E++ K + L++ PTRELA Q
Sbjct: 120 GTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQ 162
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 584 LIVVPTRELALQTSQICIELAKHTDIR 664
L++ PTRELA Q ++ + KH +R
Sbjct: 136 LVLCPTRELAQQVQEVAYSVGKHCKLR 162
>SB_59149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 482 KRCTCKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPT 601
++C C+S G G G YC P+ + + P ++ + PT
Sbjct: 56 QQCICQS--GYGGNGDYCFPINQVLPPTSLPVRTEVPTPT 93
>SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 475 RAIGIEAS*IGDGFSHPFSKIPINNSRFKQNS 380
RA+G+ ++ +G G S PF+ I +NN R N+
Sbjct: 476 RAVGLASADLG-GASDPFAVIEVNNQRLVTNT 506
>SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)
Length = 1176
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 324 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKD 488
KD+ T+D +DT G +E C+ + + G K + AS +A GK+
Sbjct: 881 KDKDDNTTDTSDTTGGGNKEACIGADSVDSAECDGAGKGEGLDAASKEVACEGKE 935
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,079,723
Number of Sequences: 59808
Number of extensions: 294053
Number of successful extensions: 718
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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