Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00080
         (666 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    41   4e-05
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   2.8  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 40.7 bits (91), Expect = 4e-05
 Identities = 17/44 (38%), Positives = 30/44 (68%)
 Frame = +3

Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
           FE   L+ E++  + +  + KP+PIQ  +IPI L+G+D++A A+
Sbjct: 176 FERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQ 219



 Score = 34.7 bits (76), Expect = 0.003
 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 7/44 (15%)
 Frame = +2

Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQ-------ALIVVPTRELALQ 619
           G+GKT A+ +P++  +  K+D+++        +IV PTRELA+Q
Sbjct: 221 GSGKTAAFMLPMIHHLLDKEDSLELRTRNPYIVIVAPTRELAIQ 264


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 184 RDKFGKMMTENRISSSN 234
           R K G MMTEN+ S+ N
Sbjct: 224 RKKLGSMMTENKASTFN 240


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,194
Number of Sequences: 2352
Number of extensions: 10329
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)