Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00080
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 122 2e-28
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 52 4e-07
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 52 4e-07
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 49 3e-06
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 49 3e-06
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 47 1e-05
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 47 1e-05
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 46 2e-05
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 45 6e-05
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 44 1e-04
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 42 3e-04
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 41 7e-04
U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical p... 41 0.001
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 39 0.003
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 39 0.003
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 38 0.006
Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical pr... 37 0.011
Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical pr... 37 0.011
U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA he... 37 0.011
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 37 0.015
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 36 0.026
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 36 0.026
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 36 0.026
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 34 0.079
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 34 0.10
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 33 0.18
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 33 0.18
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 33 0.18
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 33 0.18
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 32 0.42
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 32 0.42
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 32 0.42
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 32 0.42
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 32 0.42
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 31 0.56
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 31 0.97
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 30 1.7
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 30 1.7
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 29 2.2
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 29 3.0
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 29 3.0
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 5.2
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 5.2
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 5.2
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 5.2
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 5.2
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 5.2
U88181-2|AAB42303.1| 491|Caenorhabditis elegans Dnaj domain (pr... 27 9.1
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 122 bits (294), Expect = 2e-28
Identities = 54/73 (73%), Positives = 64/73 (87%)
Frame = +3
Query: 288 DVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIP 467
D WK+ L +P KDRR KT+DVTDT+G EFE+FCL R+LLMGIFEKGWEKPSPIQEASI
Sbjct: 16 DENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIG 75
Query: 468 IALSGKDVLARAK 506
+AL+G+D+LARAK
Sbjct: 76 VALTGQDILARAK 88
Score = 85.4 bits (202), Expect = 3e-17
Identities = 35/52 (67%), Positives = 45/52 (86%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
GTGKTGAYCIPV+E++ P IQA+++VPTRELALQTSQIC+EL+KH ++
Sbjct: 90 GTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSKHIQLK 141
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/53 (49%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDT-IQALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT A+ IP+L+++ + T I+AL+V PTRELALQT ++ EL + T +R
Sbjct: 71 GSGKTAAFVIPMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLR 123
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
+++ L + I +KG+ +P+PIQ +IP + GKDV+A ++
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSR 69
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/53 (49%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDT-IQALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT A+ IP+L+++ + T I+AL+V PTRELALQT ++ EL + T +R
Sbjct: 71 GSGKTAAFVIPMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLR 123
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
+++ L + I +KG+ +P+PIQ +IP + GKDV+A ++
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSR 69
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/64 (31%), Positives = 38/64 (59%)
Frame = +2
Query: 470 CPKWKRCTCKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAK 649
C K ++ GTGKT + + +L+++D + +QAL++ PTRELA Q ++ L +
Sbjct: 63 CTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGE 122
Query: 650 HTDI 661
+ ++
Sbjct: 123 YLNV 126
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F++ LK ELL GI+ G+EKPS IQ+ +I +GKDV+A+A+
Sbjct: 31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQ 74
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/64 (31%), Positives = 38/64 (59%)
Frame = +2
Query: 470 CPKWKRCTCKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAK 649
C K ++ GTGKT + + +L+++D + +QAL++ PTRELA Q ++ L +
Sbjct: 63 CTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGE 122
Query: 650 HTDI 661
+ ++
Sbjct: 123 YLNV 126
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F++ LK ELL GI+ G+EKPS IQ+ +I +GKDV+A+A+
Sbjct: 31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQ 74
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
GTGKT + I VL+ +D + QALI+ PTRELA+Q ++ + L + +++
Sbjct: 73 GTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYMNVQ 124
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/44 (43%), Positives = 32/44 (72%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F++ L+ +LL GI+ G+EKPS IQ+ ++P L +DV+A+A+
Sbjct: 28 FDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQ 71
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
GTGKT + I VL+ +D + QALI+ PTRELA+Q ++ + L + +++
Sbjct: 73 GTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYMNVQ 124
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/44 (45%), Positives = 32/44 (72%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F++ L+ +LL GI+ G+EKPS IQ+ +IP L +DV+A+A+
Sbjct: 28 FDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQ 71
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 357 DTRGN-EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
DT N FE+ L R++L G+ P+PIQ+A IP+AL+GKD+ A A
Sbjct: 143 DTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACA 192
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = +2
Query: 488 CTCKS*EGTGKTGAYCIPVLEQV--DPK-KDTIQALIVVPTRELALQTSQICIELA 646
C C + GTGKT A+ +P+LE++ PK + L++VPTRELA+Q Q+ +L+
Sbjct: 189 CACAA-TGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLS 243
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +3
Query: 336 IKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
I+ D D + F E + + L GW KPS IQ+A++P AL GKDV+ A+
Sbjct: 33 IEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAE 89
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQ 628
G+GKTGA+ IPVL+ + L++ PTRELA Q Q
Sbjct: 91 GSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQ 130
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAK 649
GTGKT A+ IP+L+++ I ALI+ PTRELA Q ++ L K
Sbjct: 136 GTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGK 182
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAK 649
GTGKT A+ IP+L+++ I ALI+ PTRELA Q ++ L K
Sbjct: 136 GTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGK 182
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F +F L +L I E GWEK + +QE+ I +AL K+++ RA+
Sbjct: 91 FADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRAR 134
Score = 34.3 bits (75), Expect = 0.079
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDT------IQALIVVPTRELALQTSQICIELAK 649
G+GKTGA+ IP+++++ + T A+I+ PT+EL Q ++ ++L++
Sbjct: 136 GSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQ 188
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F F + L+ I + +E+P+PIQ +IP ALSG+DVL AK
Sbjct: 267 FAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAK 310
Score = 35.5 bits (78), Expect = 0.034
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Frame = +2
Query: 509 GTGKTGAYCIP----VLEQVDPKK-DTIQALIVVPTRELALQTSQ 628
G+GKT AY P +++Q D K + A+IVVPTRELA+Q Q
Sbjct: 312 GSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQ 356
>U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical
protein F57B9.3 protein.
Length = 363
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3
Query: 390 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLVL 530
LK ELL GI+ G+EKPS IQ++++ +GKDV +++ K V+
Sbjct: 3 LKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVI 49
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELA 646
GTGKT + + +E +D + IQ +IV PTRE+++Q + ++A
Sbjct: 69 GTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVA 114
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +3
Query: 357 DTRGN-EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK----KELVK 521
D + N FE + ++ L + +++PSP+Q +IP+ L G+D+L +AK K LV
Sbjct: 17 DVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVF 76
Query: 522 LVLIV 536
VL V
Sbjct: 77 SVLAV 81
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELA 646
GTGKT + + +E +D + IQ +IV PTRE+++Q + ++A
Sbjct: 69 GTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVA 114
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +3
Query: 357 DTRGN-EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK----KELVK 521
D + N FE + ++ L + +++PSP+Q +IP+ L G+D+L +AK K LV
Sbjct: 17 DVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQAKSGTGKTLVF 76
Query: 522 LVLIV 536
VL V
Sbjct: 77 SVLAV 81
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 37.9 bits (84), Expect = 0.006
Identities = 30/99 (30%), Positives = 48/99 (48%)
Frame = +3
Query: 240 RK*YQQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIF 419
+K Q KG+ + +D+V K + +K S T R FE+F L L G+
Sbjct: 43 KKRKQDLKGQEETMLDEVEQKYQ-------EMLKKSSRTFLR---FEDFPLSWRTLEGLK 92
Query: 420 EKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLVLIV 536
+ + KP+ IQ +I +L+G DV+ AK K + +V
Sbjct: 93 DNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALV 131
Score = 36.3 bits (80), Expect = 0.020
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDT----IQALIVVPTRELALQT 622
G+GKT A IPVLE + K + + ALI+ PTRELALQT
Sbjct: 123 GSGKTLALVIPVLEALWRAKWSPDYGLGALIISPTRELALQT 164
>Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical
protein C26D10.2b protein.
Length = 268
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 494 CKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQ 628
C++ G GKT + I L+Q++P + + + TRELA Q S+
Sbjct: 83 CQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISK 127
>Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical
protein C26D10.2a protein.
Length = 425
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 494 CKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQ 628
C++ G GKT + I L+Q++P + + + TRELA Q S+
Sbjct: 83 CQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISK 127
>U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA
helicase protein.
Length = 417
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 494 CKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQ 628
C++ G GKT + I L+Q++P + + + TRELA Q S+
Sbjct: 82 CQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISK 126
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 369 NEFEEFCLKRELLMGIFEK-GWEKPSPIQEASIPIALSGKDVL 494
N FE+ +MG K G+EKPSPIQ P+ LSG+D +
Sbjct: 83 NSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCI 125
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTD 658
GTGKT A+ + +L ++D Q + + PT ELA Q ++ ++ K D
Sbjct: 258 GTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFID 307
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTD 658
GTGKT A+ + +L ++D Q + + PT ELA Q ++ ++ K D
Sbjct: 283 GTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFID 332
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTD 658
GTGKT A+ + +L ++D Q + + PT ELA Q ++ ++ K D
Sbjct: 667 GTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFID 716
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 34.3 bits (75), Expect = 0.079
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
+EE E+ + E G+ +P+PIQ +IPI L +DV+ A+
Sbjct: 303 WEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAE 346
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVD--PKKDTIQ-------ALIVVPTRELALQTSQ 628
G+GKT A+ +P+L + PK + + A+I+ PTRELA Q +
Sbjct: 348 GSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEE 396
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 372 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
EF E L ++ ++ K ++KP+ IQ S PIA+SG+D+++ AK
Sbjct: 131 EFNEAPLPGQIHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAK 174
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQA-----LIVVPTRELALQTSQICIE 640
G+GKT A+ +P L + + + L+++PTRELA Q ++ I+
Sbjct: 176 GSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSID 224
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTI-QALIVVPTRELALQ 619
G+GKT Y +PVL V K I QA+I+VP + L Q
Sbjct: 166 GSGKTICYVLPVLAAVGSKPSKILQAVILVPVQTLVAQ 203
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Frame = +2
Query: 509 GTGKTGAYCIPVLE---QVDPKKDTIQALIVV-PTRELALQTSQICIELAKHTDI 661
G+GKT A+ +P +E +++ K+ +I+V PTREL++QT + EL + +++
Sbjct: 115 GSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSNL 169
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 5/52 (9%)
Frame = +2
Query: 509 GTGKTGAYCIP----VLEQVDPKK-DTIQALIVVPTRELALQTSQICIELAK 649
G+GKT A+ +P +L+Q + ++ D A+I+ PTRELA+QT + + AK
Sbjct: 351 GSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAK 402
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 405 LMGIFEK-GWEKPSPIQEASIPIALSGKDVLARAK 506
+M + +K + KP+ IQ +IP +SG+DV+ AK
Sbjct: 315 MMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAK 349
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
FEEF + EL + W P+ +Q +IP L G D L A+
Sbjct: 4 FEEFGIIPELSDALSSLNWTLPTAVQSEAIPAILGGADALIAAE 47
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 31.9 bits (69), Expect = 0.42
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F + + + + + G+ + +PIQ+ ++P+ GKD+LA A+
Sbjct: 300 FSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQ 343
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDT---------IQALIVVPTRELALQ 619
G+GKT A+ +P++ ++ +KD + +I+ PTRELA Q
Sbjct: 345 GSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQ 390
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 31.9 bits (69), Expect = 0.42
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F + + + + + G+ + +PIQ+ ++P+ GKD+LA A+
Sbjct: 300 FSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQ 343
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDT---------IQALIVVPTRELALQ 619
G+GKT A+ +P++ ++ +KD + +I+ PTRELA Q
Sbjct: 345 GSGKTAAFLLPIMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQ 390
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F E ++ + G+ KP+P+Q+ SIP L+ +D+++ A+
Sbjct: 141 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQ 184
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F E ++ + G+ KP+P+Q+ SIP L+ +D+++ A+
Sbjct: 125 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQ 168
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F E ++ + G+ KP+P+Q+ SIP L+ +D+++ A+
Sbjct: 122 FNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQ 165
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F + L + I G+++P+P+Q+ SIP G+D+++ A+
Sbjct: 168 FSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQ 211
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQV----------DPKKDTIQALIVVPTRELALQTSQICIELAKHTD 658
G+GKT A+ +PV++++ + A+++ PTRELA QT ++ +T
Sbjct: 173 GSGKTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANTS 232
Query: 659 I 661
I
Sbjct: 233 I 233
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
F + + LL + E +PSPIQ SIP ++VLA A
Sbjct: 128 FSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASA 170
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Frame = +2
Query: 509 GTGKTGAYCIP----VLEQVDPKKDTI------QALIVVPTRELALQTSQICIELAKHTD 658
G+GKT A+ IP ++E+ + +D + LIV PTREL QT +L T
Sbjct: 783 GSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETG 842
Query: 659 IR 664
++
Sbjct: 843 LK 844
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Frame = +2
Query: 509 GTGKTGAYCIP----VLEQVDPKKDTI------QALIVVPTRELALQTSQICIELAKHTD 658
G+GKT A+ IP ++E+ + +D + LIV PTREL QT +L T
Sbjct: 783 GSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETG 842
Query: 659 IR 664
++
Sbjct: 843 LK 844
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Frame = +2
Query: 515 GKTGAYCIPVLEQV----------DPKKDTIQALIVVPTRELALQTSQICIELAKHTDI 661
GKT A+ +P+++++ + D ALI+ PTRELA Q + ++TDI
Sbjct: 430 GKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQNTDI 488
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 420 EKGWEKPSPIQEASIPIALSGKDVLARA 503
+KG P+ IQ IP+ALSG+D++ A
Sbjct: 207 QKGIVTPTAIQIQGIPVALSGRDMIGIA 234
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 11/48 (22%)
Frame = +2
Query: 509 GTGKTGAYCIPV----LEQVDPKKDTI-------QALIVVPTRELALQ 619
G+GKT A+ IP+ LE D ++T +ALIV PTREL +Q
Sbjct: 36 GSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQ 83
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 11/48 (22%)
Frame = +2
Query: 509 GTGKTGAYCIPV----LEQVDPKKDTI-------QALIVVPTRELALQ 619
G+GKT A+ IP+ LE D ++T +ALIV PTREL +Q
Sbjct: 203 GSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQ 250
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 249 YQQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSD 350
+QQ G D S DD+ + + +P DRRI D
Sbjct: 5259 FQQGAGHDDGSRDDLRYPPRFNVPLWDRRIPVGD 5292
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 249 YQQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSD 350
+QQ G D S DD+ + + +P DRRI D
Sbjct: 4619 FQQGAGHDDGSRDDLRYPPRFNVPLWDRRIPVGD 4652
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 249 YQQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSD 350
+QQ G D S DD+ + + +P DRRI D
Sbjct: 5259 FQQGAGHDDGSRDDLRYPPRFNVPLWDRRIPVGD 5292
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 249 YQQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSD 350
+QQ G D S DD+ + + +P DRRI D
Sbjct: 5259 FQQGAGHDDGSRDDLRYPPRFNVPLWDRRIPVGD 5292
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 249 YQQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSD 350
+QQ G D S DD+ + + +P DRRI D
Sbjct: 4619 FQQGAGHDDGSRDDLRYPPRFNVPLWDRRIPVGD 4652
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 249 YQQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSD 350
+QQ G D S DD+ + + +P DRRI D
Sbjct: 5259 FQQGAGHDDGSRDDLRYPPRFNVPLWDRRIPVGD 5292
>U88181-2|AAB42303.1| 491|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 7 protein.
Length = 491
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 255 QTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELL 407
+ +GE+ K+I D+ SKL D +TS + T G+ E + RE L
Sbjct: 185 EERGELKKAIHDMRIVSKLSTDSTDTMFETSKLLYTVGDLEESLNVIRECL 235
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,140,682
Number of Sequences: 27780
Number of extensions: 238278
Number of successful extensions: 629
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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