Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00080
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       39   4e-05
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 16/44 (36%), Positives = 32/44 (72%)
 Frame = +3

Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
           FE   L+  +L  I + G++KP+P+Q+ ++PI ++G+D++A A+
Sbjct: 198 FEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQ 241



 Score = 29.5 bits (63), Expect = 0.030
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
 Frame = +2

Query: 509 GTGKTGAYCIPVLEQ-VDPKKDTI--------QALIVVPTRELALQTSQICIELAKHTDI 661
           G+GKT A+ +P++   ++   D +        Q +IV PTREL +Q  Q  ++ + ++ +
Sbjct: 243 GSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSIL 302

Query: 662 R 664
           +
Sbjct: 303 K 303


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 429 IPFQKYPSTILASNKT 382
           I FQKY S  L SN+T
Sbjct: 379 ISFQKYMSGTLNSNET 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,876
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)