Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00080
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 113 1e-25
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 113 1e-25
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 113 1e-25
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 113 1e-25
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 112 2e-25
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 52 3e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 50 2e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 48 4e-06
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 48 6e-06
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 48 6e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 48 6e-06
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 46 2e-05
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 46 2e-05
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 46 2e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 46 3e-05
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 46 3e-05
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 46 3e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 45 4e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 45 5e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 42 4e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 42 5e-04
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 41 6e-04
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 41 6e-04
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 41 6e-04
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 40 0.001
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 40 0.002
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 40 0.002
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 40 0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 39 0.003
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 39 0.003
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 39 0.003
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 38 0.005
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 38 0.008
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 38 0.008
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 37 0.014
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 36 0.018
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 36 0.018
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 36 0.024
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 36 0.032
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 35 0.042
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 35 0.056
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 34 0.074
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 34 0.098
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 33 0.13
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 32 0.30
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 32 0.30
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 32 0.30
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 32 0.39
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 32 0.39
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 31 0.52
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 31 0.52
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 31 0.52
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 31 0.69
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 31 0.69
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 31 0.91
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 30 1.2
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 30 1.2
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 2.1
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 29 2.8
At1g56230.1 68414.m06464 expressed protein 29 2.8
At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family pr... 28 6.4
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 28 6.4
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 28 6.4
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 28 6.4
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 27 8.5
At1g55915.1 68414.m06413 expressed protein similar to Hypothetic... 27 8.5
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 113 bits (272), Expect = 1e-25
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +3
Query: 252 QQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGW 431
Q T+ E + WK+ L++PP D R +T+DVT T+GNEFE++ LKR+LL GI+EKG+
Sbjct: 85 QTTQPEASSDANGQDWKATLRLPPPDTRYQTADVTATKGNEFEDYFLKRDLLKGIYEKGF 144
Query: 432 EKPSPIQEASIPIALSGKDVLARAK 506
EKPSPIQE SIPIAL+G D+LARAK
Sbjct: 145 EKPSPIQEESIPIALTGSDILARAK 169
Score = 84.2 bits (199), Expect = 7e-17
Identities = 36/52 (69%), Positives = 47/52 (90%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
GTGKTGA+CIPVLE++DP + IQA+I+VPTRELALQTSQ+C EL+K+ +I+
Sbjct: 171 GTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQ 222
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 113 bits (272), Expect = 1e-25
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +3
Query: 252 QQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGW 431
Q T+ E + WK+ L++PP D R +T+DVT T+GNEFE++ LKR+LL GI+EKG+
Sbjct: 85 QTTQPEASSDANGQDWKATLRLPPPDTRYQTADVTATKGNEFEDYFLKRDLLKGIYEKGF 144
Query: 432 EKPSPIQEASIPIALSGKDVLARAK 506
EKPSPIQE SIPIAL+G D+LARAK
Sbjct: 145 EKPSPIQEESIPIALTGSDILARAK 169
Score = 84.2 bits (199), Expect = 7e-17
Identities = 36/52 (69%), Positives = 47/52 (90%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
GTGKTGA+CIPVLE++DP + IQA+I+VPTRELALQTSQ+C EL+K+ +I+
Sbjct: 171 GTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQ 222
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 113 bits (271), Expect = 1e-25
Identities = 51/79 (64%), Positives = 67/79 (84%)
Frame = +3
Query: 270 VDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPI 449
+D + +D WK++LK+P D R +T DVT T+GNEFE++ LKRELLMGI+EKG+E+PSPI
Sbjct: 100 IDPNSED--WKARLKLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPI 157
Query: 450 QEASIPIALSGKDVLARAK 506
QE SIPIAL+G+D+LARAK
Sbjct: 158 QEESIPIALTGRDILARAK 176
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
GTGKT A+CIPVLE++D + IQA+I+VPTRELALQTSQ+C EL KH I+
Sbjct: 178 GTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQ 229
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 113 bits (271), Expect = 1e-25
Identities = 51/79 (64%), Positives = 67/79 (84%)
Frame = +3
Query: 270 VDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPI 449
+D + +D WK++LK+P D R +T DVT T+GNEFE++ LKRELLMGI+EKG+E+PSPI
Sbjct: 100 IDPNSED--WKARLKLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPI 157
Query: 450 QEASIPIALSGKDVLARAK 506
QE SIPIAL+G+D+LARAK
Sbjct: 158 QEESIPIALTGRDILARAK 176
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
GTGKT A+CIPVLE++D + IQA+I+VPTRELALQTSQ+C EL KH I+
Sbjct: 178 GTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQ 229
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 112 bits (270), Expect = 2e-25
Identities = 52/84 (61%), Positives = 68/84 (80%)
Frame = +3
Query: 255 QTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWE 434
Q++ D + +D WK+ LK+PP+D R +T DVT T+GNEFE++ LKR+LL GI+EKG+E
Sbjct: 118 QSEAISDSNNED--WKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFE 175
Query: 435 KPSPIQEASIPIALSGKDVLARAK 506
KPSPIQE SIPIAL+G D+LARAK
Sbjct: 176 KPSPIQEESIPIALTGSDILARAK 199
Score = 81.4 bits (192), Expect = 5e-16
Identities = 35/51 (68%), Positives = 45/51 (88%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDI 661
GTGKTGA+CIP LE++DP+ + IQA+I+VPTRELALQTSQ+C EL+K+ I
Sbjct: 201 GTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKI 251
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/75 (36%), Positives = 42/75 (56%)
Frame = +3
Query: 282 IDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEAS 461
+D+V +++ DR + + FEE L L+ + +KG EKP+ IQ+++
Sbjct: 17 VDEVEKAEEVEEQRNDREQEEEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSA 76
Query: 462 IPIALSGKDVLARAK 506
IP L GKDV+ARAK
Sbjct: 77 IPYILEGKDVVARAK 91
Score = 35.1 bits (77), Expect = 0.042
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +2
Query: 392 EARIVDGYF*KGMGEAISYSRGLNSYCPKWKRCTCKS*EGTGKTGAYCIPVLEQ------ 553
++R++ KG+ + + Y + K ++ G+GKT AY +P+L++
Sbjct: 54 DSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADS 113
Query: 554 VDPKKDTIQALIVVPTRELALQ 619
V KK A I+VP+REL Q
Sbjct: 114 VSKKKLAPSAFILVPSRELCQQ 135
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/58 (36%), Positives = 38/58 (65%)
Frame = +2
Query: 488 CTCKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDI 661
C + G+GKT Y + + ++P++ ++QA+IVVPTREL +Q +++ LA ++I
Sbjct: 116 CILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEI 173
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/69 (40%), Positives = 40/69 (57%)
Frame = +3
Query: 321 PKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLAR 500
P +KTSD ++ F++F L L I + G+E + +QEA++PI L GKDVLA+
Sbjct: 367 PTGEHVKTSDSYLSK-TRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAK 425
Query: 501 AKKELVKLV 527
AK K V
Sbjct: 426 AKTGTGKTV 434
Score = 35.9 bits (79), Expect = 0.024
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +2
Query: 482 KRCTCKS*EGTGKTGAYCIPVLEQV--------DPKKDTIQALIVVPTRELALQTSQICI 637
K K+ GTGKT A+ +P +E V D ++ I L+V PTRELA Q +
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEAN 479
Query: 638 ELAKH 652
L K+
Sbjct: 480 TLLKY 484
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLVLIV 536
F +F LK ELL I + G+E PS +Q IP A+ G DV+ +AK + K + V
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFV 101
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 494 CKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAK 649
C++ G GKT + + L+Q++P + AL++ TRELA QIC E +
Sbjct: 88 CQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAY---QICNEFVR 136
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLVLIV 536
F +F LK ELL I + G+E PS +Q IP A+ G DV+ +AK + K + V
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFV 101
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 494 CKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAK 649
C++ G GKT + + L+Q++P + AL++ TRELA QIC E +
Sbjct: 88 CQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAY---QICNEFVR 136
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPK--KDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT A+ IP+LE++ + ++ALI+ PTR+LA QT + EL K TD+R
Sbjct: 75 GSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLR 128
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
FE L + I +KG++ P+PIQ ++P+ LSG DV+A A+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMAR 73
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +2
Query: 452 RGLNSYCPKWKRCTCKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQI 631
RG+ +C K ++ GTGKT +C VL+Q+D QAL++ PTRELA Q ++
Sbjct: 70 RGIIPFC-KGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKV 128
Query: 632 CIELAKHTDIR 664
L + ++
Sbjct: 129 MRALGDYLGVK 139
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 369 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
+ F+ L+ +LL GI+ G+EKPS IQ+ I G DV+ +A+
Sbjct: 41 DSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQ 86
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLVLI 533
F + +K ++L G++E G+EKPS IQ+ ++ L G+DV+A+A+ K +I
Sbjct: 37 FNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMI 89
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
GTGKT + V + VD +QALI+ PTRELA QT + + H +I+
Sbjct: 82 GTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQ 133
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +2
Query: 452 RGLNSYCPKWKRCTCKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQI 631
RG+ +C K ++ GTGKT +C VL+Q+D QAL++ PTRELA Q ++
Sbjct: 68 RGIVPFC-KGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKV 126
Query: 632 CIELAKHTDIR 664
L + ++
Sbjct: 127 MRALGDYLGVK 137
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F+ L+ LL GI+ G+EKPS IQ+ I G DV+ +A+
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQ 84
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 45.6 bits (103), Expect = 3e-05
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +3
Query: 261 KGEVDKS-IDDVGWKSKLKIPPKDRRI-KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWE 434
+G KS +D+ K P +I KTSD ++ F++F L L GI + G++
Sbjct: 43 RGREGKSDVDEPLIKKPASTTPLVTQIAKTSDSYLSK-TRFDQFPLSPLTLKGIEDAGFK 101
Query: 435 KPSPIQEASIPIALSGKDVLARAKKELVKLV 527
+ +QEA++P+ L GKD+LA+AK K V
Sbjct: 102 TMTVVQEATLPLILQGKDILAKAKTGTGKTV 132
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Frame = +2
Query: 482 KRCTCKS*EGTGKTGAYCIPVLEQV--------DPKKDTIQALIVVPTRELALQTS 625
K K+ GTGKT A+ +P +E V D + I L+V PTRELA Q +
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAA 173
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +2
Query: 473 PKWKRCTCKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKH 652
P K ++ G+GKT + + +L +VDP QAL + PTRELA Q ++ ++ K
Sbjct: 129 PPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKF 188
Query: 653 TDI 661
T I
Sbjct: 189 TGI 191
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Frame = +3
Query: 321 PKDRRIK---TSDVTDTRGNEFEEFCLKRELLMGIF-EKGWEKPSPIQEASIPIALS--G 482
P+D IK + D T + FE+ L EL+ G++ E +EKPS IQ S+P+ ++
Sbjct: 72 PEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPH 131
Query: 483 KDVLARA 503
K ++A+A
Sbjct: 132 KHLIAQA 138
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +2
Query: 452 RGLNSYCPKWKRCTCKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQI 631
RG+ +C K ++ GTGKT +C VL+Q+D QAL++ PTRELA Q ++
Sbjct: 68 RGIVPFC-KGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKV 126
Query: 632 CIELAKHTDIR 664
L + ++
Sbjct: 127 MRALGDYQGVK 137
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F+ L+ LL GI+ G+EKPS IQ+ I G DV+ +A+
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQ 84
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 45.2 bits (102), Expect = 4e-05
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 324 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
K R S +T TR F+ + L L I + G+E + +QEA++PI L GKDVLA+A
Sbjct: 42 KTRNANDSYLTKTR---FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKA 98
Query: 504 KKELVKLV 527
K K V
Sbjct: 99 KTGTGKTV 106
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Frame = +2
Query: 476 KWKRCTCKS*EGTGKTGAYCIPVLEQV--------DPKKDTIQALIVVPTRELALQTSQI 631
K K K+ GTGKT A+ +P +E V D K+ I AL++ PTRELA Q +
Sbjct: 90 KGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATE 149
Query: 632 CIELAKH 652
L K+
Sbjct: 150 ANTLLKY 156
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/54 (42%), Positives = 31/54 (57%)
Frame = +3
Query: 342 TSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
T D + F E L R LL G++KP+PIQ A IP+AL+G+D+ A A
Sbjct: 158 TVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASA 211
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQV--DPKKD-TIQALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT A+ +P LE++ PK+ + LI+ PTRELA+Q + LA+ TDI+
Sbjct: 214 GSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIK 268
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
+EE L ELL + G++KPSPIQ A+IP+ L +DV+ A+
Sbjct: 315 WEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAE 358
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVD---PKKDTIQ-----ALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT A+ +P+L + P + + A+++ PTRELA Q + ++ A + R
Sbjct: 360 GSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFR 419
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Frame = +2
Query: 509 GTGKTGAYCIPVLE-----QVDPKKDTIQALIVVPTRELALQTSQICIELAKH 652
G+GKT A+ IP +E + P+ T +++ PTRELA+QT + EL KH
Sbjct: 136 GSGKTLAFLIPAVELLFKERFSPRNGT-GVIVICPTRELAIQTKNVAEELLKH 187
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F E ++ EL+ GW+ PS IQ ++P AL GKDV+ A+
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQ 54
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 12/52 (23%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQV-------DPKK-----DTIQALIVVPTRELALQTSQ 628
G+GKTGA+ IP+L+ + +PKK A ++ PTRELA+Q ++
Sbjct: 56 GSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAE 107
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 494 CKS*EGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAK 649
C++ G GKT + + L+Q++P + AL++ TRELA QIC E +
Sbjct: 5 CQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAY---QICNEFVR 53
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIR 664
GTGKT I V + V+ +Q L++ P+RELA QT + + HT+I+
Sbjct: 69 GTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQ 120
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/53 (32%), Positives = 35/53 (66%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLVLI 533
F++ + ++L G+++ G++KPS IQ+ ++ L G+DV+A+A+ K +I
Sbjct: 24 FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMI 76
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQ 628
G+GKT A+ +P+L ++ + AL+V PTRELA Q ++
Sbjct: 105 GSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAE 144
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 360 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
T FE L + E G KP+P+Q +P L+G+DVL A+
Sbjct: 55 TSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQ 103
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
FE ELL + G+ P+PIQ S PIA+ G+D++A AK
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
FE ELL + G+ P+PIQ S PIA+ G+D++A AK
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
FE ELL + G+ P+PIQ S PIA+ G+D++A AK
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKK----DTIQALIVVPTRELALQTSQICIELAK 649
G+GKT A+ IP+LE++ ++ D + +I+ PTRELA QT + ++ K
Sbjct: 118 GSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGK 168
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +3
Query: 327 DRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
+RR+ S+ G E + E++ + KG EK PIQ+A + A+ G+D++ RA+
Sbjct: 90 ERRVGDSESVGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRAR 149
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQV------DPKKDTIQALIVVPTRELALQTSQICIELAKHTD 658
GTGKT A+ IP+++++ + L++ PTRELA Q + E A D
Sbjct: 151 GTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLD 206
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
FE+ +++ I ++ +EKP+ IQ ++PI LSG+DV+ AK
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAK 273
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +2
Query: 482 KRCTCKS*EGTGKTGAYCIPVLEQVD-PKKDTIQALIVVPTRELALQTSQ 628
+ C + G+GKT A+ P+L ++ P D I+A+I+ P RELA QT++
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAR 228
Score = 35.1 bits (77), Expect = 0.042
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 402 LLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
+L + E G+++P+PIQ +IPI LSG++ A A
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACA 185
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/42 (38%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKK-DTIQALIVVPTRELALQTSQI 631
G+GKT +Y +P+++ + + ++AL+V+PTR+LALQ +
Sbjct: 72 GSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDV 113
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
FE L E+L + G+ P+PIQ + PIAL +D++A AK
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAK 480
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 324 KDRRIKTS-DVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLAR 500
+D I+TS D N F E L L + I + KP+P+Q +IPI L G+D++A
Sbjct: 143 EDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMAC 202
Query: 501 AK 506
A+
Sbjct: 203 AQ 204
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQ-----------ALIVVPTRELALQTSQICIELAKHT 655
G+GKT A+C P++ + K +Q A+I+ PTRELA Q + + T
Sbjct: 206 GSGKTAAFCFPIISGI-MKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQT 264
Query: 656 DIR 664
++
Sbjct: 265 GVK 267
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQ----ALIVVPTRELALQTSQICIELAKH 652
G+GKT A+ IP +E + K T + L++ PTRELA+Q+ + EL K+
Sbjct: 201 GSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKY 252
Score = 32.7 bits (71), Expect = 0.23
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 QQTKGEVDKSIDDVGWKSKLK-IPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKG 428
++ K + K D KS+ + + K+ K + + FE L I E G
Sbjct: 114 EEPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMG 173
Query: 429 WEKPSPIQEASIPIALSGKDVLARAK 506
+ + + IQ +IP + G+DVL A+
Sbjct: 174 FARMTQIQAKAIPPLMMGEDVLGAAR 199
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 390 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
L +LL+ + G++ P+PIQ +IP AL+GK +LA A
Sbjct: 117 LPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASA 154
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVD---PKKDTIQ---ALIVVPTRELALQ 619
GTGKT AY P++ + PK D AL++VPTREL LQ
Sbjct: 77 GTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQ 119
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 426 GWEKPSPIQEASIPIALSGKDVLARA 503
G+E P+ +Q +IP+ LSG+DVL A
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNA 74
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 35.5 bits (78), Expect = 0.032
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 13/50 (26%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDP-------------KKDTIQALIVVPTRELALQ 619
G+GKT AY +P+L ++ P K+ IQA+IV P+REL +Q
Sbjct: 157 GSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQ 206
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 35.1 bits (77), Expect = 0.042
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 324 KDRRIKTS-DVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLAR 500
+D I+TS D N F E L L + I + KP+P+Q +IPI +G+D++A
Sbjct: 130 EDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMAC 189
Query: 501 AK 506
A+
Sbjct: 190 AQ 191
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQ-----------ALIVVPTRELALQTSQICIELAKHT 655
G+GKT A+C P++ + K I+ A+I+ PTRELA Q + + T
Sbjct: 193 GSGKTAAFCFPIISGI-MKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQT 251
Query: 656 DIR 664
++
Sbjct: 252 GVK 254
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 34.7 bits (76), Expect = 0.056
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 414 IFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
++ G+ PSPIQ S PIA+ +D++A AK
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
F++ R +L + EKG +P+PIQ +P+ L+G+D++ A
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIA 190
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 33.9 bits (74), Expect = 0.098
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 390 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
L ++L + + +EKP PIQ ++PI +SG+D + AK
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAK 441
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 390 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
L ++L + + +EKP PIQ ++PI +SG+D + AK
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAK 574
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQV------DPKKDTIQALIVVPTRELALQTSQICIELAKHTD 658
GTGKT A+ IP+++++ + Q L++ PTRELA Q + E A D
Sbjct: 163 GTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLD 218
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 399 ELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
E++ + +G EK PIQ+A + A+ G+D++ RA+
Sbjct: 126 EIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRAR 161
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F+E C+ L + G K + +Q+A++ L GKD L +AK
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAK 420
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Frame = +2
Query: 464 SYCPKWKRCTCKS*EGTGKTGAYCIPVLEQVDPKKDT---------IQALIVVPTRELAL 616
S C K K+ GTGK+ A+ +P +E V ++ I LI+ PTRELA
Sbjct: 407 SECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELAS 466
Query: 617 QTSQICIELAKHTD 658
Q + L K+ D
Sbjct: 467 QIAAEGKALLKNHD 480
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 423 KGWEKPSPIQEASIPIALSGKDVLARAK 506
K +EKPSPIQ + P L G+D++ AK
Sbjct: 132 KTFEKPSPIQSHTWPFLLDGRDLIGIAK 159
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTI---------QALIVVPTRELALQTSQICIE 640
G+GKT A+ IP + V K I L++ PTRELA+Q S + E
Sbjct: 161 GSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLRE 213
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 402 LLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
LL + +KG P+PIQ +P+ LSG+D++ A
Sbjct: 108 LLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIA 141
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F+E C+ L + G K + +Q+A++ L GKD L +AK
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAK 373
Score = 30.7 bits (66), Expect = 0.91
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Frame = +2
Query: 464 SYCPKWKRCTCKS*EGTGKTGAYCIPVLEQVDPKKDT---------IQALIVVPTRELAL 616
S C K K+ GTGK+ A+ +P +E V ++ I ALI+ PTRELA
Sbjct: 360 SECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELAS 419
Query: 617 Q 619
Q
Sbjct: 420 Q 420
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F++ +L I + G+ +P+PIQ P+AL G+D++ A+
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210
Score = 31.5 bits (68), Expect = 0.52
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQ-----ALIVVPTRELALQTSQ 628
G+GKT AY +P L V + Q LI+ PTRELA+Q +
Sbjct: 212 GSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 375 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
F++ +L I + G+ +P+PIQ P+AL G+D++ A+
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210
Score = 31.5 bits (68), Expect = 0.52
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQ-----ALIVVPTRELALQTSQ 628
G+GKT AY +P L V + Q LI+ PTRELA+Q +
Sbjct: 212 GSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 31.5 bits (68), Expect = 0.52
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Frame = +2
Query: 482 KRCTCKS*EGTGKTGAYCIPVLEQVDPKK---------DTIQALIVVPTRELALQTSQIC 634
K C G+GKT AY +PV++++ ++ + +++VPT ELA Q C
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANC 471
Query: 635 IELAK 649
++K
Sbjct: 472 RSISK 476
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 390 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
L + + + + G+++PS Q IP LSGKDV+ A+
Sbjct: 87 LSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAE 125
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKK-----DTIQALIVVPTRELALQTSQICIELAKHTDIR 664
G+GKT +Y +P + V+ + D L++ PTRELA+Q Q + + I+
Sbjct: 146 GSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIK 202
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 402 LLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
+L + + G+ +P+PIQ P+A+ G+D++ A+
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAE 144
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 30.7 bits (66), Expect = 0.91
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 575 IQALIVVPTRELALQTSQICIELAKHTDIR 664
++ALI+ PTRELALQ ++ AK+ ++
Sbjct: 280 LRALIITPTRELALQVTEHLENAAKNLSVK 309
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 369 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
N F + L L + I + +P+P+Q +IPI L+ +D++A A+
Sbjct: 151 NTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQ 196
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQ----------ALIVVPTRELALQTSQICIELAKHTD 658
G+GKT A+C P++ + + + A+I+ PTRELA Q + + T
Sbjct: 198 GSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTG 257
Query: 659 IR 664
++
Sbjct: 258 VK 259
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 369 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 506
N F + L L + I + +P+P+Q +IPI L+ +D++A A+
Sbjct: 151 NTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQ 196
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQ----------ALIVVPTRELALQTSQICIELAKHTD 658
G+GKT A+C P++ + + + A+I+ PTRELA Q + + T
Sbjct: 198 GSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTG 257
Query: 659 IR 664
++
Sbjct: 258 VK 259
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 348 DVTDTRGNEFEEFCLKRELLMGIFEKGWEKPS-----PIQEASIPIALSGKDVLARAK 506
D + ++ EE + + L E+ EK PIQ A + AL G+D++ARAK
Sbjct: 90 DNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAK 147
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTIQA----------LIVVPTRELALQTSQICIELAKH 652
GTGKT A+ IP+++++ + A L++ PTRELA Q + E A +
Sbjct: 149 GTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPY 206
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 351 VTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 503
+T+TR ++ E L +++ + + +E +P+Q A+IP+ S KDV A
Sbjct: 11 LTETRFSDLEP-PLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDA 60
>At1g56230.1 68414.m06464 expressed protein
Length = 752
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 321 PKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQ 452
P++ R T V D G E F ++ + G+F++G E PSP++
Sbjct: 475 PQEGRWLTRTVLDHAGREC--FVIRIRVGKGVFKRGGEVPSPVK 516
>At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 651
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 249 YQQTKGEVDKSIDDVGWKSKLKIPPKDR 332
+++ G+++ SI DV W ++ P +DR
Sbjct: 101 FRKMSGQLENSIGDVSWLLRVSAPAEDR 128
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQVDPKKDTI---------QALIVVPTRELALQTSQICIELAKHTDI 661
G+GKT AY +P+++ + + + + +++ PTREL+ Q ++ ++ H
Sbjct: 159 GSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARF 218
Query: 662 R 664
R
Sbjct: 219 R 219
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 390 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLVLIVFQF 545
L +++ + G+E +P+Q +IP S KDV+ A K + + F
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPF 74
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 390 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKKELVKLVLIVFQF 545
L +++ + G+E +P+Q +IP S KDV+ A K + + F
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPF 75
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Frame = +2
Query: 509 GTGKTGAYCIPVLEQV--DPKKD--------TIQALIVVPTRELALQTS 625
G GKT A+ +P+LE + P K + L+++PTRELA Q +
Sbjct: 143 GQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVA 191
>At1g55915.1 68414.m06413 expressed protein similar to Hypothetical
30.6 kDa protein in ACT5-YCK1 intergenic region
(Swiss-Prot:P38838) [Saccharomyces cerevisiae]; similar
to Yhr134wp (GI:500671) [Saccharomyces cerevisiae]
Length = 404
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Frame = +3
Query: 297 WKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSP---IQEASIP 467
W + PP + SDV D FE C KR G K P + ++SIP
Sbjct: 254 WSNAHSCPPSSSHQQGSDVIDLTEESFEIRCTKRNRSPGDQGPSCAKDVPNAGVMKSSIP 313
Query: 468 I 470
+
Sbjct: 314 L 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,178,975
Number of Sequences: 28952
Number of extensions: 217054
Number of successful extensions: 663
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -