Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00079
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    46   0.001
UniRef50_Q54WN3 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = -2

Query: 383 FFLLRWKDELTARLVLSGYWSP 318
           F LLRW DELTA LVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q54WN3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 561

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 628 IISSKFFFNLEIRSDCFNKWNVNLLTKIIMSMDIHIVLVFFMSRI 494
           I+ ++F FNL  +S  FNK N N +       DI+I+  F +S I
Sbjct: 40  ILENRFLFNLYYQSYLFNKNNENAINFKFQFNDIYILESFILSNI 84


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,011,973
Number of Sequences: 1657284
Number of extensions: 13055167
Number of successful extensions: 26488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26487
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)