Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00079
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   2.6  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.5  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 24/81 (29%), Positives = 38/81 (46%)
 Frame = +3

Query: 222 LMNYQMSNSLNYCPICSHSFSRWVAHLSCRYLWAPVTT*HQAGCELVLPSKQKKKPMQLN 401
           L N  M  S+N     SHS    V + S + + + +     AG   V PS + +K ++LN
Sbjct: 396 LGNIYMPQSINNVEPTSHSSISKVVNPSEKVI-SKIERACLAGNGNVHPSIKMEKNLELN 454

Query: 402 PNXXXXXXXXXKINTILFVSR 464
           P+         KIN+ + VS+
Sbjct: 455 PHPRTLNATEHKINSRIQVSK 475


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 357 AHSPPGVKWLLEPIDIYNLNAPPTLK 280
           A  PP +K    P+DI N++A   LK
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,469
Number of Sequences: 5004
Number of extensions: 59495
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)